Table 3.
The genomic prediction of N. lugens clip-domain serine proteases and serine protease inhibitors
| Predicted gene | GenBank ID | Locus | Size (aa) | Exon | Orientation | UTR | Best match | Similarity |
|---|---|---|---|---|---|---|---|---|
|
Clip domain serine proteases | ||||||||
|
proclotting enzyme-1 |
KC355213 |
scaffold424 |
397 |
7 |
+ |
no |
A.pisum |
56% |
|
proclotting enzyme-2 |
KC355214 |
scaffold424 |
376 |
11 |
- |
no |
A.pisum |
55% |
|
proclotting enzyme-3 |
KC355215 |
scaffold1854 |
460 |
9 |
- |
have |
A.pisum |
66% |
|
proclotting enzyme-4 |
KC355216 |
scaffold32 |
535 |
8 |
+ |
no |
A.pisum |
62% |
|
proclotting enzyme-5 |
KC355217 |
scaffold973 |
264 |
5 |
+ |
no |
D.plexippus |
68% |
|
serine protease snake-1 |
KC355219 |
scaffold407 |
363 |
7 |
+ |
have |
A.pisum |
54% |
|
serine protease snake-2 |
KC355220 |
scaffold183 |
partial |
5 |
- |
no |
T. castaneum |
51% |
|
serine protease snake-3 |
KC355221 |
scaffold183 |
partial |
7 |
- |
no |
A.pisum |
47% |
|
serine protease snake-4 |
KC355222 |
scaffold3538 |
546 |
7 |
+ |
no |
P. h.corporis |
58% |
|
serine protease snake-5 |
KC355223 |
scaffold407 |
358 |
8 |
- |
no |
A.pisum |
41% |
|
serine protease snake-6 |
KC355224 |
scaffold407 |
378 |
8 |
- |
no |
A.pisum |
45% |
|
serine protease snake-7 |
KC355225 |
scaffold407 |
362 |
6 |
- |
no |
A.pisum |
53% |
|
Serine protease inhibitors | ||||||||
|
serpin-1 |
KC355226 |
scaffold2106 |
partial |
8 |
+ |
no |
C. suppressalis |
69% |
|
serpin-2 |
KC355239 |
scaffold1141 |
402 |
5 |
+ |
have |
A.gambiae |
55% |
|
serpin-3 |
KC355227 |
scaffold690 |
400 |
5 |
+ |
have |
T. castaneum |
53% |
|
serpin-4 |
KC355228 |
scaffold1199 |
408 |
8 |
- |
no |
A.pisum |
60% |
|
serpin-5 |
KC355229 |
scaffold914 |
492 |
7 |
- |
no |
B. mori |
73% |
|
serpin-6 |
KC355230 |
scaffold3763 |
partial |
11 |
- |
no |
C. quinquefasciatus |
62% |
|
serpin-7 |
KC355231 |
scaffold1822 |
505 |
4 |
+ |
no |
A.pisum |
57% |
|
serpin-8 |
KC355232 |
scaffold1121 |
partial |
4 |
+ |
no |
A.pisum |
83% |
| serpin-9 | KC355233 | scaffold1452 | partial | 5 | - | no | A.pisum | 64% |
The genomic organization of exons and introns of the genes for pattern recognition proteins is predicted based on the mRNA-genome alignments at the NCBI spideyweb (http://www.ncbi.nlm.nih.gov/spidey/spideyweb.cgi). A.pisum, Acyrthosiphon pisum; D. plexippus, Danaus plexippus; T. castaneum,Tribolium castaneum; P. h. corporis, Pediculus humanus corporis; C. suppressalis, Chilo suppressalis; A. gambiae, Anopheles gambiae; B. mori, Bombyx mori; C.quinquefasciatus, Culex quinquefasciatus.