Table 1.
Identified gene numbers by the proposed method, EDGE and Sohn’s method for testing non-flat gene expressions in the wild type cells, adjusted at FDR levels of 0.01 and 0.05
| |
FDR = 0.01 |
FDR = 0.05 |
||||||
|---|---|---|---|---|---|---|---|---|
| |
Genes |
Overlap |
Overlap |
Genes |
Overlap |
Overlap |
||
| identified | w/Orlando | w/proposed | identified | w/Orlando | w/proposed | |||
| Proposed |
1180 |
750 |
- |
1958 |
901 |
- |
||
| EDGE |
1076 |
617 |
809 |
1705 |
783 |
1322 |
||
| Sohn’s | 985 | 590 | 767 | 1636 | 769 | 1291 | ||
The numbers of genes overlapped with the list by [17] and the proposed method are also included.