Table 2.
Identified gene numbers by the proposed method, EDGE and Sohn’s method for comparing gene expression profiles between the wild type and the cyclin mutant, adjusted at FDR levels of 0.01 and 0.05, respectively
| |
FDR = 0.01 |
FDR = 0.05 |
||||||
|---|---|---|---|---|---|---|---|---|
| |
Genes |
Overlap |
Overlap |
Genes |
Overlap |
Overlap |
||
| identified | w/Orlando | w/proposed | identified | w/Orlando | w/proposed | |||
| Proposed |
883 |
631 |
- |
1086 |
735 |
- |
||
| EDGE |
704 |
524 |
679 |
839 |
600 |
833 |
||
| Sohn’s | 522 | 410 | 516 | 758 | 557 | 755 | ||
The numbers of genes overlapped with the list by [17] and the proposed method are also included.