Table V.
Summary of SNPs with p<10−5 in tests of parent-of-origin effect tests.
| Marker | Chr | Coordinate | MAF* | Gene symbol | p value | Estimate |
|---|---|---|---|---|---|---|
| CL | ||||||
| rs2591089 | 14 | 75657553 | 0.15 | BCYRN1 | 5.076E-06 | 0.26 (0.47,0.14) |
| rs8054408 | 16 | 19154025 | 0.19 | SYT17 | 5.298E-06 | 4.76 (9.09,2.38) |
| CLP | ||||||
| rs1339083 | 1 | 1.86E+08 | 0.28 | intergenic | 1.437E-06 | 0.45 (0.62,0.32) |
| rs2383658 | 1 | 1.86E+08 | 0.30 | intergenic | 1.289E-06 | 0.45 (0.62,0.33) |
| rs92833 | 5 | 2391908 | 0.26 | intergenic | 3.31E-06 | 0.46 (0.64,0.33) |
| rs10811366 | 9 | 2055892 | 0.05 | SMARCA2 | 3.033E-06 | 0.26 (0.47,0.15) |
| rs1662695 | 9 | 86595032 | 0.12 | NTRK2 | 5.913E-06 | 2.44 (3.57,1.67) |
| CL/P | ||||||
| rs1437903 | 2 | 1.33E+08 | 0.30 | NAP5 | 6.601E-06 | 1.89 (2.50,1.43) |
| rs6834028 | 4 | 1.25E+08 | 0.48 | intergenic | 5.187E-06 | 1.85 (2.38,1.41) |
| rs960925 | 4 | 1.25E+08 | 0.48 | intergenic | 4.766E-06 | 1.85 (2.38,1.41) |
| rs92833 | 5 | 2391908 | 0.26 | intergenic | 5.801E-06 | 0.53 (0.70,0.40) |
| rs11153238 | 6 | 1.11E+08 | 0.23 | intergenic | 4.658E-06 | 0.51 (0.68,0.38) |
| rs2196457 | 12 | 94798821 | 0.22 | CCDC38 | 5.07E-06 | 0.49 (0.67,0.36) |
| rs10150163 | 14 | 87789351 | 0.31 | KCNK10 | 4.482E-06 | 1.92 (2.56,1.47) |
| rs2401756 | 14 | 87790661 | 0.31 | KCNK10 | 6.836E-06 | 1.92 (2.50,1.45) |
| CP | ||||||
| rs7516430 | 1 | 1.45E+08 | 0.21 | CHD1L | 7.66E-06 | 3.45 (5.88,1.96) |
| rs12144639 | 1 | 2.12E+08 | 0.21 | intergenic | 5.699E-06 | 0.29 (0.51,0.17) |
| rs1834570 | 8 | 3775138 | 0.04 | CSMD1 | 1.477E-06 | 20 (100,5) |
*
MAF: minor allele frequency in all samples