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. 2013 Apr 4;8(4):e61185. doi: 10.1371/journal.pone.0061185

Table 2. Diversity statistics based on concatinated CO1+ND5 sequences (1785 bp) of C. irregularis populations (sampled with more than one specimen) and in subclades and clades (as determined by the phylogenetic tree).

Group Sample size Polymorphic sites Number of haplotypes Haplotype diversity Nucleotide diversity
Total 90 144 30 0.882 0.017
Clade A 14 73 8 0.901 0.016
 Subclade Ae 7 23 4 0.714 0.005
  Car I 2 17 2 1.000 0.010
  Car II 5 11 2 0.400 0.002
 Subclade As 7 39 4 0.857 0.011
  Car III 4 2 2 0.667 0.001
  Car V 2 0 1
Clade B 76 61 22 0.838 0.009
 Subclade Bn 38 10 8 0.559 0.001
  Sue 6 1 2 0.333
  Hz I 6 0 1
  Hz II 5 3 2 0.400 0.001
  Hai I 6 2 2 0.333
  Hai II 5 4 4 0.900 0.001
  Hai III 4 2 2 0.667 0.001
 Subclade Bs 30 17 9 0.667 0.002
  Sw I 5 0 1
  Sw II 5 1 2 0.400 0.000
  Sw III 4 2 3 0.833 0.001
  Bla 6 6 2 0.533 0.002
  Ju I 5 1 2 0.400
  Slo I 4 4 2 0.500 0.001
 Subclade Bsl 8 25 7 0.964 0.006
  Slo II 4 20 4 1.000 0.007
  Slo III 4 11 3 0.833 0.003