Table 2. Diversity statistics based on concatinated CO1+ND5 sequences (1785 bp) of C. irregularis populations (sampled with more than one specimen) and in subclades and clades (as determined by the phylogenetic tree).
Group | Sample size | Polymorphic sites | Number of haplotypes | Haplotype diversity | Nucleotide diversity |
Total | 90 | 144 | 30 | 0.882 | 0.017 |
Clade A | 14 | 73 | 8 | 0.901 | 0.016 |
Subclade Ae | 7 | 23 | 4 | 0.714 | 0.005 |
Car I | 2 | 17 | 2 | 1.000 | 0.010 |
Car II | 5 | 11 | 2 | 0.400 | 0.002 |
Subclade As | 7 | 39 | 4 | 0.857 | 0.011 |
Car III | 4 | 2 | 2 | 0.667 | 0.001 |
Car V | 2 | 0 | 1 | – | – |
Clade B | 76 | 61 | 22 | 0.838 | 0.009 |
Subclade Bn | 38 | 10 | 8 | 0.559 | 0.001 |
Sue | 6 | 1 | 2 | 0.333 | – |
Hz I | 6 | 0 | 1 | – | – |
Hz II | 5 | 3 | 2 | 0.400 | 0.001 |
Hai I | 6 | 2 | 2 | 0.333 | – |
Hai II | 5 | 4 | 4 | 0.900 | 0.001 |
Hai III | 4 | 2 | 2 | 0.667 | 0.001 |
Subclade Bs | 30 | 17 | 9 | 0.667 | 0.002 |
Sw I | 5 | 0 | 1 | – | – |
Sw II | 5 | 1 | 2 | 0.400 | 0.000 |
Sw III | 4 | 2 | 3 | 0.833 | 0.001 |
Bla | 6 | 6 | 2 | 0.533 | 0.002 |
Ju I | 5 | 1 | 2 | 0.400 | – |
Slo I | 4 | 4 | 2 | 0.500 | 0.001 |
Subclade Bsl | 8 | 25 | 7 | 0.964 | 0.006 |
Slo II | 4 | 20 | 4 | 1.000 | 0.007 |
Slo III | 4 | 11 | 3 | 0.833 | 0.003 |