Table 3.
Conserved targets of known miRNAs identified during cotton SE.
| miRNA | Target ID | Target annotation | Cleavage site | Abundance | Score | |
|---|---|---|---|---|---|---|
| EC | CK | |||||
| miR156 | zhu2_gi|164260183|gb|ES799263.1|ES799263# | SPL 9 | 493 | 1035 | 83 | 1 |
| zhu2_CL15525Contig1 | SPL | 567 | 0 | 320 | 1 | |
| miR160 | zhu2_gi|164303952|gb|ES831580.1|ES831580# | ARF16 | 31 | 0 | 374 | 2.5 |
| miR167 | zhu2_CL3970Contig2# | ARF6 | 659 | 482 | 1518 | 4 |
| zhu2_CL11135Contig1 | ARF6 | 471 | 482 | 1518 | 4 | |
| zhu2_CL3970Contig1 | ARF 6 | 79 | 482 | 1518 | 4 | |
| zhu2_CL15585Contig1# | ARF 6 | 524 | 482 | 1518 | 4 | |
| zhu2_CL4794Contig1# | ARF 8 | 905 | 380 | 230 | 4 | |
| zhu2_gi|164348622|gb|ES831296.1|ES831296 | ARF 6 | 577 | 0 | 1306 | 4 | |
| zhu2_CL3001Contig1 | ARF 6 | 1004 | 0 | 1306 | 4 | |
| miR168 | zhu2_CL2858Contig3 | Ribonuclease H-like superfamily protein | 980 | 56 | 0 | 4 |
| miR169 | zhu2_CL17360Contig1# | NF-YA3 | 1282 | 125 | 0 | 2 |
| miR319 | zhu2_gi|164329837|gb|ES808978.1|ES808978 | Myb/SANT-like family protein | 662 | 0 | 23 | 4 |
| zhu2_gi|164369589|gb|ES805414.1|ES805414 | Myb/SANT-like family protein | 663 | 0 | 23 | 4 | |
| miR393 | zhu2_CL2451Contig2 | TIR1 | 192 | 83 | 88 | 2.5 |
| zhu2_CL2451Contig1 | TIR1 | 1784 | 83 | 88 | 2.5 | |
| zhu2_CL14972Contig1# | TIR1 | 46 | 83 | 0 | 2.5 | |
| miR396 | zhu2_CL3508Contig2# | GRF8 | 1001 | 18 | 0 | 1 |
| zhu2_CL9598Contig1 | GRF5 | 512 | 0 | 374 | 1 | |
| miR398 | zhu2_gi|164324123|gb|ES849495.1|ES849495# | CZSOD | 39 | 30 | 0 | 4 |
‘#’ miRNA targets validated by RLM-5’ RACE.
The cleavage site is the nucleotide number from the 5’ end of cDNA.