Table 6. Number of putative species delimited by the different species delimitation methods applied to the COI dataset: overall barcoding gap analysis (OGA), pairwise gap analysis (PGA), 3% threshold, stylommatophoran 4% threshold, 10× rule, 3.2–4.1× rule, ABGD method, SDP (Rosenberg’s PAB and Rodrigo’s P(RD)), GSI with both BI and ML trees and GMYC method.
Classical barcoding gap analysis | ABGD | SDP | GSI | GMYC | ||||||||||
Putative species | PAB | P(RD) | ||||||||||||
OGA | PGA | 3% | 4% | 10× | 3.2–4.1× | BI | ML | BI | ML | BI | ML | BI | ||
A | + | + | + | + | − | + | + | + | − | + | − | + | + | + |
B | na | na | na | na | na | na | na | na | na | na | na | na | na | na |
C | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
D | − | − (B) | − | − | − | − | na | + | na | − | − | + | − | |
Da * | + | + | + | + | + | + | + | − | − | + | + | + | + | + |
Db * | + | + | − | + | − | + | + | − | − | − | − | + | + | + |
E | − | − (F) | − | − | − | − | + | + | − | − | − | − | ||
Ea | − | − (F) | − | − | − | − | − | − | − | − | ||||
Eb | + | + | − | − | − | − | + | − | − | + | − | + | + | − |
Ea3-4 * | + | + | + | + | + | + | + | − | − | + | + | + | + | + |
Eb1-4 * | + | + | + | + | + | + | − | − | − | + | + | + | + | + |
Eb5-8 * | + | + | + | + | − | + | − | − | − | + | + | + | + | + |
F | − | − (Ea) | − | + | − | − | − | − | − | − | ||||
F+Ea1-2 * | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
R. saharica (S) | + | + | − | + | − | + | + | + | − | − | + | + | − | |
Sa | + | + | + | + | + | + | + | − | − | + | + | + | + | + |
Sb | + | + | + | + | + | + | + | − | − | + | + | + | + | + |
Species within R. decollata | 7 or 8 | 7 or 8 | 7 | 8 | 5 | 8 | 7 | 4 | 4 | 6 or 7 | 6 | 7 or 8 | 6 or 8 | 8 |
Species within R. saharica | 1 or 2 | 1 or 2 | 2 | 1 or 2 | 2 | 1 or 2 | 2 | 1 | 1 | 2 | 2 | 1 or 2 | 1 or 2 | 2 |
Species within Rumina | 8 or 10 | 9 or 10 | 9 | 9 or 10 | 7 | 9 or 10 | 9 | 5 | 5 | 8 or 9 | 8 | 8 or 10 | 7 or 10 | 10 |
+: MOTU supported as a putative species;
−: no support as a putative species; empty cases: group is not suggested or cannot be analyzed by the method; parentheses: MOTU responsible for the absence of barcoding gap;
: additional MOTU defined by the COI data.