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. 2013 Apr 5;8(4):e60736. doi: 10.1371/journal.pone.0060736

Table 7. Summary statistics reported by the Species Delimitation plugin for COI in each putative species A) BI tree (Clade support is PP) and B) ML (Clade support is BS).

A)
MOTU Closest Species Clade Support Intra Inter Intra/Inter P ID(Strict) Rosenberg's PAB Rodrigo’s P(RD)
A B 0.95 0.128 0.175 0.11 0.95 (0.90, 1.0) 7.90E−17* <0.05*
C B 1 0.052 1.424 0.04 0.97 (0.97, 1.0) 9.60E−15* <0.05*
D Paraphyletic
Da Db 0.99 0.04 1.342 0.03 0.77 (0.60, 0.95) 6.10E−05 <0.05*
Db Da 1 0.306 1.342 0.23 0.64 (0.46, 0.82) 3.60E−05 0.89
E B 1 0.673 2.282 0.3 0.83 (0.74, 0.91) 5.50E−15* 0.97
Ea Eb 1 0.044 1.265 0.03 0.57 (0.42, 0.72) 3.64E−03 <0.05*
Eb Ea 0.99 0.395 1.265 0.31 0.82 (0.73, 090) 3.64E−03 <0.05*
Ea3-4 Eb1-4 1 0.044 1.16 1 0.57 (0.42, 0.72) 3.64E−03 <0.05*
Eb1-4 Eb5-8 1 0.051 0.66 1 0.88 (0.76, 1.0) 1.98E−03 <0.05*
Eb5-8 Eb1-4 1 0.086 0.66 1 0.78 (0.64, 0.92) 1.98E−03 <0.05*
F +Ea1-2 B 0.99 0.113 2.319 0.05 0.92 (0.82, 1.00) 6.10E−13* <0.05*
S Da 1 0.254 2.52 0.1 0.96 (0.90, 1.00) 6.10E−06* 0.29
Sa Sb 1 0.048 0.752 0.06 0.75 (0.57, 0.92) 1.10E−04 <0.05*
Sb Sa 0.85 0.06 0.452 0.08 0.97 (0.91, 1.00) 1.10E−04 <0.05*
B)
MOTU Closest Species Clade Support Intra Inter Intra/Inter P ID(Strict) Rosenberg's PAB Rodrigo’s P(RD)
A B 89 0.012 0.206 0.06 0.97 (0.92, 1.00) 2.85E−03 0.06
C B 100 0.003 0.264 0.01 0.98 (0.92, 1.00) 6.70E−08* <0.05*
D B 68 0.12 0.227 0.53 0.58 (0.45, 0.71) 5.60E−08* 1
Da Db 98 0.001 0.187 0.01 0.79 (0.61, 0.96) 0.02 <0.05*
Db Da 100 0.037 0.187 0.2 0.66 (0.48, 0.84) 0.02 0.35
E C 100 0.095 0.319 0.3 0.82 (0.74, 0.91) 6.70E−08* 1
Ea Eb 100 0.003 0.191 0.02 0.58 (0.43, 0.73) 3.64E−03 <0.05*
Eb Ea 76 0.05 0.191 0.26 0.84 (0.76, 0.93) 3.64E−03 0.26
Ea3-4 Eb1-4 100 0.003 0.174 100 0.58 (0.43, 0.73) 3.64E−03 <0.05*
Eb1-4 Eb5-8 98 0.003 0.086 98 0.91 (0.79, 1.0) 1.98E−03 <0.05*
Eb5-8 Eb1-4 100 0.007 0.086 100 0.81 (0.67, 0.96) 1.98E−03 <0.05*
F +Ea1-2 B 98 0.009 0.313 0.03 0.93 (0.83, 1.00) 7.10E−12* <0.05*
S F +Ea1-2 100 0.028 0.539 0.05 0.98 (0.92, 1.00) 5.50E−21* 1
Sa Sb 100 0.002 0.093 0.02 0.78 (0.60, 0.95) 1.10E−04 <0.05*
Sb Sa 76 0.003 0.093 0.03 0.98 (0.93, 1.00) 1.10E−04 <0.05*

Intra / Inter – ratio of Intra (genetic differentiation among members of a putative species) to Inter (genetic differentiation between the members of a putative species and the members of the closest putative species), P ID(Strict) - mean (95% confidence interval) probability of correctly identifying an unknown member of a given clade using the criterion that it must fall within, but not sister to, the species clade in a tree, Rosenberg’s PAB - probability of reciprocal monophyly under a random coalescent model and Rodrigo’s P(RD) – probability that a clade has the observed degree of distinctiveness due to random coalescent processes.

*

Significant values (values remained significant after Bonferroni correction).