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. 2013 Feb 28;14:138. doi: 10.1186/1471-2164-14-138

Table 2.

Genes selected from microarray data for validation by qPCR

Protein ID          Sequence Gene homology
10799
s CGACCGGCCAGGAGAGCAC
regulation of pH - Na/H exchanger
as GGCTTGAACACGGGCTTGG
27509
s CCCAGAACTACCGCCTTGAA
CVNH domain-containing protein
as TCAACCCAGCTACCGTCCAC
28147
s GCAAGAACATCCGCGACGAG
C-type lectin
as CGCATAGCCTTCCTGAGCAT
28324
s GCCAACGAAGAACGAAGCAG
Hypothetical
as CTGATCGCCCTGTCCCATAA
34827
s CCGAGTCTCTTGTTGCTGTCCTA
ATPase
as TCGGAGCAGATGTTGGTGAC
56294
s CCGCAGGTGAGAATCAGAGAGT
ATPase
as CGTCTTCGTCTGTCGGTGTG
68068
s TGAGGATCACTGGCATTGCTC
predicted small secreted cysteine-rich protein
as GGTAGGTGGGAGATGGCACA
74915
s TTCGTCATGGAGGCTGCTG
ATPase
as ACCGCAGATGACACCGAAAT
75759
s AATGATACGATGAACACACGACCT
pH-response regulator protein palC
as GTGAATCTCACGGCCCGAAG
77023
s TTCCACCTCGGCAAATATGATG
methyltransferase
as TCCTGGCCGTATCAATGAAGA
79497
s TCTCGTTGGTGCCTGGATTG
H+/oligopeptide symporter
as CAGAGGCGACGAGGATAACG
89677
s GCGCTGATACCTACTGCCTTGA
Fe2+/Zn2+ regulated transporter
as ATCGGGATCTGCAGTGTCGT
40391
s ACGCCGAGACGCTCTATGAAC
Transcription factor PacC
as GGTGGTGCGACAAGAGTTCC
67662
s GCTGACCTCCGACTGATTGAAG
ATPase, P-type
as GCCAGTGGCATCATCAAAGA
43392
s CCTCTGTAACCTCGATTCCAACG
peptidylprolyl isomerase A [PPIA] - normalization gene
as AGCTCTGGCTCCTGGGTAGG
77851
s CGTACTACAGCCGCTACCAGACC
ribosomal protein L5 [RPL5] - normalization gene
as AGGCGGTACTTGGGAGCATT
88010
s ACTTCAACGAGGCTTCTGGCAAC
Tubulin - normalization gene
as CGGAACAGCTGGCCAAAGG
91925
s AGGAAGAAGTTGCTGCCCTCGTCATCGACA
Actin - normalization gene
  as CCCATACCGATCATGATACCATGGTGACG  

Following microarray analyses, genes were chosen based on fold change and relevance. Protein ID numbers refer to the T. virens v1.0 database.