Table 2.
Genes selected from microarray data for validation by qPCR
| Protein ID | Sequence | Gene homology |
|---|---|---|
| 10799 |
s CGACCGGCCAGGAGAGCAC |
regulation of pH - Na/H exchanger |
| as GGCTTGAACACGGGCTTGG | ||
| 27509 |
s CCCAGAACTACCGCCTTGAA |
CVNH domain-containing protein |
| as TCAACCCAGCTACCGTCCAC | ||
| 28147 |
s GCAAGAACATCCGCGACGAG |
C-type lectin |
| as CGCATAGCCTTCCTGAGCAT | ||
| 28324 |
s GCCAACGAAGAACGAAGCAG |
Hypothetical |
| as CTGATCGCCCTGTCCCATAA | ||
| 34827 |
s CCGAGTCTCTTGTTGCTGTCCTA |
ATPase |
| as TCGGAGCAGATGTTGGTGAC | ||
| 56294 |
s CCGCAGGTGAGAATCAGAGAGT |
ATPase |
| as CGTCTTCGTCTGTCGGTGTG | ||
| 68068 |
s TGAGGATCACTGGCATTGCTC |
predicted small secreted cysteine-rich protein |
| as GGTAGGTGGGAGATGGCACA | ||
| 74915 |
s TTCGTCATGGAGGCTGCTG |
ATPase |
| as ACCGCAGATGACACCGAAAT | ||
| 75759 |
s AATGATACGATGAACACACGACCT |
pH-response regulator protein palC |
| as GTGAATCTCACGGCCCGAAG | ||
| 77023 |
s TTCCACCTCGGCAAATATGATG |
methyltransferase |
| as TCCTGGCCGTATCAATGAAGA | ||
| 79497 |
s TCTCGTTGGTGCCTGGATTG |
H+/oligopeptide symporter |
| as CAGAGGCGACGAGGATAACG | ||
| 89677 |
s GCGCTGATACCTACTGCCTTGA |
Fe2+/Zn2+ regulated transporter |
| as ATCGGGATCTGCAGTGTCGT | ||
| 40391 |
s ACGCCGAGACGCTCTATGAAC |
Transcription factor PacC |
| as GGTGGTGCGACAAGAGTTCC | ||
| 67662 |
s GCTGACCTCCGACTGATTGAAG |
ATPase, P-type |
| as GCCAGTGGCATCATCAAAGA | ||
| 43392 |
s CCTCTGTAACCTCGATTCCAACG |
peptidylprolyl isomerase A [PPIA] - normalization gene |
| as AGCTCTGGCTCCTGGGTAGG | ||
| 77851 |
s CGTACTACAGCCGCTACCAGACC |
ribosomal protein L5 [RPL5] - normalization gene |
| as AGGCGGTACTTGGGAGCATT | ||
| 88010 |
s ACTTCAACGAGGCTTCTGGCAAC |
Tubulin - normalization gene |
| as CGGAACAGCTGGCCAAAGG | ||
| 91925 |
s AGGAAGAAGTTGCTGCCCTCGTCATCGACA |
Actin - normalization gene |
| as CCCATACCGATCATGATACCATGGTGACG |
Following microarray analyses, genes were chosen based on fold change and relevance. Protein ID numbers refer to the T. virens v1.0 database.