Table 3.

Additional pH regulated genes with functional annotation

Protein ID	Regulation in T. virens	Homology	Species and regulation
72478	upregulated at alkaline pH	GPR1/FUN34/yaaH ammonia exporter	upregulated at alkaline pH in Colletotrichum[14]
76718	upregulated at alkaline pH	glucose-repressible protein (GRG1)	upregulated at alkaline pH in Colletotrichum[14]
58111	upregulated at alkaline pH, PacC dependent	DFG5, a cell-wall glycoprotein involved in tolerance to alkaline pH	Upregulated at alkaline pH in Candida albicans[58,59]; in S. cerevisiae, expression depends on alkaline pH stress and the cell wall integrity MAPK Slt2 [57]
83099	downregulated at alkaline pH	like NAD+ epimerase/dehydratase family, EPME	alkaline pH downregulated in Colletotrichum[14]
73483	downregulated at alkaline pH (2.5 downregulation trend, though below the level of significance for our cut-off criteria)	high affinity glucose transporter	alkaline pH downregulated in Colletotrichum[14]