Table 3.
List of genes predicted in BAC clones and confirmed by annotation to Swiss-Prot, nr and EST collections with e-value cut-off 1e-50
|
FGENESH predictions |
Alignment e-values |
||||
|---|---|---|---|---|---|
| BAC clone, accession | Gene no. | Annotations by sequence similarity | est_other | nr | Swiss-Prot |
| 004G15, [EMBL:HE804808] |
1 |
iron-sulfur assembly protein IscA-like 1 |
2.0E-54 |
1.9E-49 |
7.0E-21 |
| 2 |
cell division protein ftsZ homolog 2-1 |
0 |
0 |
0 |
|
| 3 |
unknown gene |
1.7E-63 |
2.7E-62 |
- |
|
| 4 |
probable cytosolic iron-sulfur assembly protein |
0 |
0 |
1.7E-110 |
|
| 5 |
cytochrome b-c1 complex subunit 9-like |
3.4E-75 |
2.2E-53 |
2.4E-30 |
|
| 6 |
iron-sulfur assembly protein IscA-like |
1.3E-67 |
6.5E-60 |
1.4E-29 |
|
| 7 |
unknown gene |
6.0E-105 |
2.5E-98 |
- |
|
| 8 |
signal recognition particle 54 kDa protein |
0 |
0 |
0 |
|
| 9 |
small nuclear ribonucleoprotein G-like |
1.1E-69 |
1.4E-69 |
7.6E-32 |
|
| 10 |
unknown gene |
4.1E-103 |
0 |
- |
|
| 11 |
125 kDa kinesin-related protein-like |
2.3E-180 |
0 |
0 |
|
| 13 |
domain-containing protein 90-like |
0 |
9.4E-173 |
2.1E-70 |
|
| 14 |
vacuolar protein sorting-associated protein 55 |
3.9E-147 |
6.1E-146 |
7.2E-38 |
|
| |
15 |
N-acetylglucosaminyltransferase SPINDLY-like |
0 |
0 |
3.9E-177 |
| 055L12, [EMBL:HE804809] |
11 |
GRAS family transcription factor |
0 |
0 |
2.3E-170 |
| |
13 |
aldehyde dehydrogenase family 3 member F1 |
3.2E-77 |
4.4E-64 |
4.1E-20 |
| 057J20, [EMBL:HE804810] |
6 |
unknown gene |
8.6E-78 |
7.3E-80 |
- |
| 7 |
formimidoyltransferase-cyclodeaminase-like |
1.7E-176 |
2.2E-176 |
1.0E-06 |
|
| 8 |
probable galacturonosyltransferase 10 |
0 |
0 |
0 |
|
| 9 |
protein TIC 20-IV, chloroplastic, precursor |
1.4E-164 |
0 |
1.1E-64 |
|
| 13 |
vacuolar protein sorting-associated protein 18 |
0 |
0 |
2.3E-155 |
|
| 14 |
unknown gene |
6.4E-60 |
1.0E-26 |
- |
|
| |
16 |
unknown gene |
3.2E-53 |
4.9E-52 |
- |
| 067H16, [EMBL:HE804811] |
2 |
unknown gene |
2.4E-116 |
8.7E-117 |
- |
| 3 |
unknown gene |
0 |
8.1E-160 |
- |
|
| 4 |
glucan endo-1,3-beta-glucosidase 5-like |
0 |
0 |
0 |
|
| 5 |
endonuclease V |
1.9E-117 |
5.3E-113 |
3.5E-67 |
|
| 7 |
sialyltransferase-like protein |
0 |
0 |
3.8E-12 |
|
| |
8 |
auxin-induced protein 6B |
1.9E-121 |
1.4E-130 |
1.1E-17 |
| 080B11, [EMBL:HE804812] |
1 |
50S ribosomal protein L35 |
7.2E-121 |
7.9E-90 |
- |
| 2 |
unknown gene |
0 |
0 |
- |
|
| 3 |
myb family transcription factor APL-like |
7.6E-167 |
0 |
3.5E-43 |
|
| 4 |
isoflavone reductase homolog |
0 |
0 |
0 |
|
| 5 |
unknown gene |
6.2E-111 |
7.9E-111 |
- |
|
| 6 |
unknown gene |
0 |
0 |
- |
|
| 7 |
transmembrane protein 45B |
0 |
0 |
2.4E-08 |
|
| 8 |
MOB kinase activator-like 1 |
0 |
0 |
1.1E-148 |
|
| 9 |
unknown gene |
2.2E-51 |
6.6E-53 |
- |
|
| 10 |
histone-lysine N-methyltransferase ASHR2-like |
5.7E-119 |
1.7E-177 |
2.5E-103 |
|
| 14 | protein BREVIS RADIX-like | 0 | 0 | 1.3E-129 | |