Table 4. Ribosomal RNA analysis using RNAmmer.
| Organism | Status | Score | Length (bp) | Total seq. |
| Acidaminococcus fermentans DSM 20731 | Complete | 1 910.8 | 1 545 | 6 |
| Acidaminococcus intestini RyC-MR95 | Complete | 1 920.1 | 1 545 | 3 |
| Acidaminococcus sp D21 | Scaffolds/contigs | 1 920.1 | 1 545 | 1 |
| Centipeda periodontii DSM 2778 | Scaffolds/contigs | – | –* | – |
| Dialister invisus DSM 15470 | Scaffolds/contigs | 1 836.1 | 1 557 | 3 |
| Dialister micraerophilus DSM 19965 | Scaffolds/contigs | 1 878.8 | 1 555 | 1 |
| Dialister microaerophilus UPII 345-E | Scaffolds/contigs | 1 197.2 | 1 325* | 1 |
| Megamonas hypermegale ART12 1 | Complete | – | –* | – |
| Megasphaera elsdenii DSM 20460 | Complete | 1 842.0 | 1 552 | 7 |
| Megasphaera genomosp type 1 str 28L | Scaffolds/contigs | 1 860.0 | 1 557 | 1 |
| Megasphaera micronuciformis F0359 | Scaffolds/contigs | 1 816.0 | 1 550 | 1 |
| Megasphaera sp UPII 135-E | Scaffolds/contigs | 1 887.4 | 1 556 | 1 |
| Megasphaera sp UPII 199-6 | Scaffolds/contigs | 1 868.7 | 1 556 | 1 |
| Mitsuokella multacida DSM 20544 | Scaffolds/contigs | 1 915.8 | 1 549 | 2 |
| Phascolarctobacterium succinatutens YIT 12067 | Scaffolds/contigs | 1 907.9 | 1 646 | 1 |
| Selenomonas artemidis F0399 | Scaffolds/contigs | 6.368 | 1137* | 1 |
| Selenomonas flueggei ATCC 43531 | Scaffolds/contigs | 1 089.7 | 1 216* | 1 |
| Selenomonas noxia ATCC 43541 | Scaffolds/contigs | 1 364.8 | 1 296* | 1 |
| Selenomonas sp oral taxon 137 str F0430 | Scaffolds/contigs | 1 830.8 | 1 532 | 4 |
| Selenomonas sp oral taxon 149 str 67H29BP | Scaffolds/contigs | 1 252.5 | 1 258* | 1 |
| Selenomonas sputigena ATCC 35185 | Complete | 1 861.4 | 1 543 | 4 |
| Thermosinus carboxydivorans Nor1 | Scaffolds/contigs | 1 898.8 | 1 549 | 7 |
| Veillonella atypica ACS-049-V-Sch6 | Scaffolds/contigs | 1 512.8 | 1 369* | 1 |
| Veillonella atypica ACS-134-V-Col7a | Scaffolds/contigs | 1 871.2 | 1 551 | 1 |
| Veillonella dispar ATCC 17748 | Scaffolds/contigs | 1 870.5 | 1 551 | 3 |
| Veillonella parvula ATCC 17745 | Scaffolds/contigs | 1 848.5 | 1 553 | 1 |
| Veillonella parvula DSM 2008 | Complete | 1 859.5 | 1 551 | 4 |
| Veillonella sp 3 1 44 | Scaffolds/contigs | 1 861.6 | 1 553 | 1 |
| Veillonella sp 6 1 27 | Scaffolds/contigs | 1 862.2 | 1 551 | 1 |
| Veillonella sp oral taxon 158 str F0412 | Scaffolds/contigs | 1 860.5 | 1 552 | 4 |
| Veillonella sp oral taxon 780 str F0422 | Scaffolds/contigs | 1 877.1 | 1 550 | 4 |
The total number of identified 16S rRNA sequences is shown for each genome sequence. Length of highest scoring sequence and corresponding RNAmmer score is given. Default settings is to select the sequence with the highest RNAmmer score and a length between 1 400–1 800 bases. For this analysis the criteria were changed to a length range of 1 100–1 800, to include sequences from all genomes with 16S rRNA matches. Sequences with lengths shorter than the default acceptance threshold are marked with a “*”. Two organisms did not have any hits to the RNAmmer models, values of zero are marked by “−”.