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. Author manuscript; available in PMC: 2014 Apr 1.
Published in final edited form as: Clin Cancer Res. 2013 Feb 11;19(7):1816–1826. doi: 10.1158/1078-0432.CCR-12-2861

Table 1.

Panel of microsatellite markers targeting chromosome 6 and 15.

Marker Specific Location Size Primer Sequence Annealing
Temp (°C)
D6S105 Tel.(1500-2500kb)/HLA-A 116-168 5′ GCCCTATAAAATCCTAATTAAC
5′ GAAGGAGAATTGTAATTCCG
55
D6S265 Centromeric to HLA-locus A 122-144 5′ ACGTTCGTACCCATTAACCT
5′ ATCGAGGTAAACAGCAGAAA
58
D6S276 Tel(6000kb)/HLA-A 198-230 5′ TCAATCAAATCATCCCCAGAAG
5′ GGGTGCAACTTGTTCCTCCT
64
C.1.2.c/
D6S2800
HLA-locus B 186-286 5′ GGATCCTAGGAACTCCCTCCTG
5′ GAGCAGAAGGGAGATGAAATGG
58
C.1.2.5 Tel.(62kb)/HLA-B,
centr.(19kb)/HLA-C
178-220 5′ CAGTAGTAAGCCAGAAGCTATTAC
5′ AAGTCAAGCATATCTGCCATTTGG
57
D15S126 Tel./beta-2-microglobulin 188-218 5′ GTGAGCCAAGATGGCACTAC
5′ GCCAGCAATAATGGGAAGTT
60
D15S209 Tel./beta-2-microglobulin 189-212 5′ AAACATAGTGCTCTGGAGGC
5′ GGGCTAACAACAGTGTCTGC
58
D6S291 Centromeric to HLA-class II region 198-210 5′ CTCAGAGGATGCCATGTCTAAAATA
5′ GGGGATGACGAATTATTCACTAACT
57
D6S273 HLA-class III 120-140 5′ GCAACTTTTCTGTCAATCCA
5′ ACCAAACTTCAAATTTTCGG
58
D6S311 6q 229-276 5′ ATGTCCTCATTGGTGTTGTG
5′ GATTCAGAGCCCAGGAAGAT
57