Table 2.
Parameters for predicted best 3-D model.
| Name | C-scorea | TM-scoreb | RMSDb | No. of decoysc | Cluster densityd |
|---|---|---|---|---|---|
| SAG2C | −2.18 | 0.46 ± 0.15 | 11.8 ± 4.5 | 460 | 0.0285 |
| SAG2D | −1.45 | 0.54 ± 0.15 | 8.5 ± 4.5 | 4662 | 0.0842 |
| SAG2X | −2.22 | 0.45 ± 0.15 | 11.9 ± 4.4 | 455 | 0.0280 |
| SAG2Y | −1.59 | 0.52 ± 0.15 | 9.9 ± 4.6 | 2877 | 0.0525 |
aC-score is a confidence score for estimating the quality of predicted models by I-TASSER. C-score is typically in the range of [−5, 2], where a C-score of higher value signifies a model with a high confidence and vice versa.
bTM-score and RMSD are known standards for measuring structural similarity between two structures which are usually used to measure the accuracy of structure modeling when the native structure is known.
cNumber of decoys represents the number of structural decoys that are used in generating each model.
dCluster density represents the density of cluster.