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. 2013 Apr;20(4):359–371. doi: 10.1089/cmb.2012.0098

FIG. 2.

FIG. 2.

A mate-pair is a pair of reads with distance d between their starting positions. The insert size is the distance from the start of the left read to the end of the right read. Each platform has reads oriented a particular way, but for presentation purposes, we canonically reorient them as indicated.