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. 2013 Apr;20(4):359–371. doi: 10.1089/cmb.2012.0098

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Copyright 2013, Mary Ann Liebert, Inc.

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FIG. 3. — Estimating genomic distances between edges within edge-pairs using the edge-pair histogram. (a) The genome traverses the graph from e₁ to e₂ through P₁, P₂, and P₃. (b) The smoothed edge-pair histogram (inferred from mate-pairs mapping to e₁ and e₂) supports various genomic distances between e₁ and e₂. Setting the threshold to 200 (red line) splits the histogram into two edge-pair intervals: (e₁, e₂,[130, 144]), supporting the traversal via paths P₁ and P₂, and (e₁, e₂,[156, 164]), supporting the traversal through path P₃.