. 2013 Apr;20(4):359–371. doi: 10.1089/cmb.2012.0098

Table 1.

Comparison of Edge-Pairs from E. coli Genome vs. from Paired Reads

Insert size^a	\|EP₀\|^b	\|EP\|^c	FPR^d	FNR^e
215	6321	6178	0.008	0.030
500	18684	18571	0.017	0.023

^{^a}

These correspond to E. coli datasets EC215 and EC500.

^{^b}

Edge-pairs determined from the reference genome; these are correct by definition.

^{^c}

Edge-pairs determined by mapping mate-pairs to the assembly graph.

^{^d}

The False Positive Rate is the fraction of edge-pair intervals in EP that are incorrect.

^{^e}

The False Negative Rate is the fraction of genomic edge-pairs in EP₀ that are missing in EP.