Table 2.
Phasing classification | Genes, n (%) |
Total genes | 36,214 (100) |
Effectively phased genes* | 20,460 (56.5) |
Fully phased genes | 7,214 (19.9) |
All heterozygous SNPs phased, entire region covered by one haplotype block | 6,122 (16.9) |
All heterozygous SNPs phased, less than entire region covered by one haplotype block | 1,092 (3.0) |
Partially phased genes | 5,420 (15.0) |
More than 70% of heterozygous SNPs phased, entire region covered by one haplotype block | 4,214 (11.6) |
More than 70% of heterozygous SNPs phased, more than 70% of bases in largest haplotype block | 1,206 (3.3) |
Unphased genes | 3,120 (8.6) |
Less than 70% heterozygous SNPs phased | 1,265 (3.5) |
More than 70% heterozygous SNPs phased, less than 70% of bases in largest haplotype block | 1,855 (5.1) |
*Genes containing zero or one heterozygous SNP.