Table 1.
Betaretroviral elements in mega- and microbat transcriptomes
| |
|
|
P. alecto |
R. megaphyllus |
R. ferrumequinum |
|||
|---|---|---|---|---|---|---|---|---|
| |
|
|
Lowest a |
# Hits b |
Lowest |
# Hits |
Lowest |
# Hits |
| e-value | e-value | e-value | ||||||
| Betaretroviruses |
JSRV |
Gag |
1.65×10-121 |
150 |
3.86×10-28 |
9 |
ND |
0 |
| |
Pol |
<1×10-250 |
246 |
7.80×10-36 |
16 |
1.0×10-58 |
1 |
|
| |
Env |
1.29×10-51 |
48 |
4.00×10-15 |
3 |
ND |
0 |
|
|
SMR |
Gag |
1.75×10-59 |
185 |
1.31×10-15 |
3 |
ND |
0 |
|
| |
Pol |
<1×10-250 |
241 |
2.13×10-40 |
5 |
7.0×10-56 |
1 |
|
| |
Env |
2.58×10-31 |
137 |
2.65×10-31 |
2 |
1.0×10-87 |
1 |
|
|
MPMV |
Gag |
2.16×10-104 |
190 |
1.49×10-20 |
5 |
ND |
0 |
|
| |
Pol |
<1×10-250 |
287 |
7.71×10-34 |
21 |
1.0×10-58 |
1 |
|
| |
Env |
1.83×10-33 |
140 |
1.48×10-31 |
6 |
2.0×10-98 |
1 |
|
|
MMTV |
Gag |
6.85×10-53 |
90 |
4.82×10-13 |
2 |
ND |
0 |
|
| |
Pol |
<1×10-250 |
269 |
1.36×10-31 |
15 |
2.0×10-45 |
1 |
|
| |
Env |
8.39×10-54 |
19 |
ND |
0 |
ND |
0 |
|
|
SRV |
Gag |
1.70×10-108 |
185 |
2.96×10-20 |
5 |
ND |
0 |
|
| |
Pol |
<1×10-250 |
290 |
9.34×10-39 |
21 |
9.0×10-62 |
1 |
|
| Env | 1.31×10-35 | 136 | 2.75×10-26 | 2 | 1.0×10-109 | 1 | ||
aGag, Pol, and Env proteins were translated from the genomes of extant betaretroviruses and used as search queries in a tBLASTn analysis of the Illumina sequenced transcriptome of P. alecto, and the 454 sequenced transcriptomes of R. megaphyllus, and R. ferrumequinum. The e-value of the transcriptome hit with the greatest sequence similarity (lowest e-value) to each query sequence is displayed.
bThe number of transcripts identified in the transcriptomes with an e-value < 1 × 10-10. ND: No data.