Table 1.

Publicly available RNA-Seq and sRNA-Seq datasets from tomato (September, 2012)

Submission ID or Accession ID	NGS platform	Strategy	Samples	Reference
SRA049915	Illumina HiSeq2000	RNA-Seq	S. lycopersicum cv ‘Heinz 1706’: 1 cm fruit, 2 cm fruit, 3 cm fruit, MGa, Bb, B10c, bud, flower, leaf, root. S. pimpinellifolium: IMGd, Bb, B5c, leaf	The Tomato Genome Consortium (2012)
SRA047925	454 GS FLX Titanium	RNA-Seq	S. lycopersicum cv ‘MoneyMaker’: root, stem, leaf, flower, MGa, Bb, Re S. pimpinellifolium: leaf, Re	The Tomato Genome Consortium (2012)
SRA050797	AB SOLiD System 3.0	RNA-Seq	S. lycopersicum cv ‘Heinz 1706’: young leaves, old leaves, roots, stems, flowers, fruits	The Tomato Genome Consortium (2012)
SRA027382	454 GS FLX	RNA-Seq	S. lycopersicum cv ‘Ailsa Craig’: 1 cm fruit, MGa, Bb, B7c, B7c(rin), B7c(nor), B7c(Nr), B7c(hp1), B7c(apricot), B7c(TAGL1-RNAi) S. lycopersicum cv ‘M82’: pollen, unpollinated style, pollinated style S. lycopersicum M82 × M82: pollinated style S. pennellii: pollen S. pennellii LA716: pollen S. pennellii introgression line IL2-2: B7 S. pennellii LA716 × LA716: pollinated style S. pennellii LA716 × M82: pollinated style S. pennellii M82 × LA716: pollinated style	Lopez-Casado et al. (2012)
GSE12081	454f	Small RNA-Seq	S. lycopersicum cv ‘Micro-Tom’: leaf, 1–15mm green fruits	Moxon et al. (2008)
GSE18110	Illumina Genome Analyzer	Small RNA-Seq	S. lycopersicum cv ‘Micro-Tom’: bud, flower, 1–3 mm fruit, 5–7 mm fruit, 11–14 mm fruit, MGa, Bb, B3c, B5c, B7c	Mohorianu et al. (2011)
GSE32470	Illumina Genome Analyzer II	Small RNA-Seq	S. lycopersicum cv ‘Heinz 1706’: leaves, flowers, fruit	The Tomato Genome Consortium (2012)

^aMG, mature green fuit;

^bB, breaker fruit;

^cBn, breaker +n day fruit;

^dIMG, immature green fruit;

^eR, ripe fruit.

^fModel was not identified in the record.