Fig. 3.

Haplotype variation of GS3 in short seeded cultivars. The gene model for GS3 containing five exons and comprising approximately 6.2 kb is shown horizontally along the top. SNP positions with GS3 are connected by lines to the table below. Columns indicate the distribution of polymorphisms at each SNP/indel positions. Numbers indicate the size of an indel relative to Nipponbare. Asominori is one of cultivars belonging to japonica haplotype GH1, Dee Geo Woo Gen is one of cultivars belonging to indica haplotype GH9 and Lal Aman is a cultivar belonging to indica haplotype GH10 (Takano-Kai et al. 2009). White indicates the common GH1 and grey indicates a variant SNP allele.