Table 2.
Pairwise comparison of nucleotide sequence identities of NZ-2010-541 with other EV68 strains (shown in %)
| Strain | Accession number | Genome | 5′UTR | P1 | P2 | P3 | 3′UTR |
|---|---|---|---|---|---|---|---|
| JPOC10-378 |
AB601883 |
91.3 |
92.9 |
90.9 |
91.0 |
91.3 |
98.5 |
| Fermon |
AY426531 |
88.5 |
90.2 |
87.8 |
88.7 |
87.9 |
95.5 |
| 37-99 | EF107098 | 93.4 | 93.0 | 93.2 | 93.4 | 93.4 | 100.0 |
Alignment was performed using the ClustalW algorithim in MEGA, with pairwise distance calculations based upon ungapped regions of the alignment.
5’ UTR = 5’ untranslated region; P1 = precursor P1; P2 = precursor P2; P3 = precursor P3.