. 2013 Jan 25;6:25. doi: 10.1186/1756-3305-6-25

Table 1.

Known and novel microRNAs (miRNAs) identified from the pancreatic fluke Eurytrema pancreaticum

Name	Location at genome^a	mfe^b	Count^c	location^d	Sequence^e
Known miRNA
sja-bantam^f	SJC_S000254:283545:283639:+	−27.5	3488	3p	TGAGATCGCGATTAAAGCTGG
sja-let-7	SJC_S005824:19533:19622:+	−33.1	50	5p	GGAGGTAGTTCGTTGTGTGGT
sja-miR-2a	SJC_S000054:242652:242727:-	−34.2	4406	3p	TCACAGCCAGTATTGATGAAC
sja-miR-2b	SJC_S000054:242557:242635:-	−33.6	500	3p	TATCACAGCCCTGCTTGGGACAC
sja-miR-2c	SJC_S000102:360645:360725:+	−28.42	62	3p	TATCACAGCCGTGCTTAAGGGC
sja-miR-2d	SJC_S000102:360534:360627:+	−33.1	727	3p	TATCACAGTCCTGCTTAGGTGACG
sja-miR-2e	SJC_S000054:242457:242536:-	−24.7	1721	3p	TATCACAGTCCAAGCTTTGG
sja-miR-71	SJC_S000054:242738:242817:-	−33.01	19048	5p	TGAAAGACGATGGTAGTGAGA
sja-miR-71b	SJC_S000102:360305:360397:+	−36.2	144949	5p	TGAAAGACTTGAGTAGTGAGACGC
sja-miR-124	SJC_S000254:113694:113791:+	−29.8	32	3p	TAAGGCACGCGGTGAATGTCA
sja-miR-8	SJC_S001790:88898:88974:+	−31.5	12	3p	TAATACTGTTAGGTAAAGATGC
sja-miR-2162	SJC_S000471:21744:21822:-	−37.9	13	3p	TATTATGCAACGTTTCACTCT
sja-miR-10^g	SJC_S000052:310019:310093:+	−23.4	2698/11	5p/3p	AACCCTGTAGACCCGAGTTTG/AAATTCGAGTCTATAAGGA
Novel miRNA
Epa-miR-01	SJC_S000054:242558:242634:-	−31.1	97	3p	TATCACAGCCCTGCTTGGGACA
Epa-miR-02	SJC_S000057:543062:543147:-	−20.4	7	5p	AGAAGGCTGCGTGTTCGGATC
Epa-miR-03	SJC_S000065:176156:176237:+	−22	7	5p	CTGTCTTCTCTCTCATGTTC
Epa-miR-04	SJC_S000083:92590:92686:+	−27.7	16	3p	GTTTGAGACTCCGAATGATG
Epa-miR-05	SJC_S000102:360305:360397:+	−36.2	151	5p	TGAAAGACTTGAGTAGTGAG
Epa-miR-06	SJC_S000102:360535:360626:+	−33.1	111	3p	TATCACAGTCCTGCTTAGGTGAC
Epa-miR-07	SJC_S000102:360645:360725:+	−28.42	62	3p	TATCACAGCCGTGCTTAAGGGC
Epa-miR-08	SJC_S000115:155214:155289:-	−18.2	138	3p	GCTATCTCGTCGATACTGGC
Epa-miR-09	SJC_S000254:113694:113791:+	−29.8	32	3p	TAAGGCACGCGGTGAATGTCA
Epa-miR-10	SJC_S000254:283542:283641:+	−30.7	176	3p	TGAGATCGCGATTAAAGCTGGTT
Epa-miR-11	SJC_S000471:21744:21822:-	−37.9	13	3p	TATTATGCAACGTTTCACTCT
Epa-miR-12	SJC_S001790:88898:88974:+	−31.5	12	3p	TAATACTGTTAGGTAAAGATGC
Epa-miR-13	SJC_S005824:19533:19622:+	−33.1	50	5p	GGAGGTAGTTCGTTGTGTGGT
Epa-miR-14^g	SJC_S008424:1:71:+	−30.1	33/8	5p/3p	GACGGGGTGGCCGAGTGGTT/CCATTGGGGTTTCCCCGCGT

Note: ^a location of mature miRNAs at the reference genome of Schistosoma japonicum; ^b energy of stem-loop structure of miRNA precursors, with unit as Kcal/mol; ^c sequencing count; ^d location of a mature miRNA at the 3p or 5p arm of its precursor; ^e sequence of mature miRNA; ^f Known miRNAs matched perfectly with that from S. japonicum deposited in the miRBase database; ^g the only two miRNAs (miR-10, Epa-miR-14) that had mature miRNAs both detected at the 5p and 3p arms of their precursors in the E. pancreaticum. Blue: the largest family members of miR-2.