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. 2013 Apr 9;8(4):e60818. doi: 10.1371/journal.pone.0060818

Figure 1. Definition of the principal magnetic axes (xm, ym, zm) oriented relative to the nitroxide molecular frame in a TOAC-labeled α-helical peptide.

Figure 1

The ym axis is perpendicular to the others, forming a right-handed coordinate system. The rotational diffusion axes (xR, yR, zR) are taken to coincide with the magnetic frame (see text). The local director, zD, is defined as the average orientation of the zR axis over the course of its motion. In the rotational diffusion frame, where zR is fixed, zD traces a trajectory around zR. The orienting potential is then expressed as a function of the polar angles Inline graphic of zD in the rotational diffusion frame. The TOAC spin label was inserted at position 13 according to Ghimire and collaborators [32] using MolMol program [33].