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. 2013 Feb 9;5(3):514–524. doi: 10.1093/gbe/evt021

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© The Author(s) 2013. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2.— — Numbers of polymorphic and fixed indels and single-nucleotide substitutions in genome compartments of different kinds. Top row (A–D), polymorphisms with DAF < 15%; middle row (E–H), polymorphisms with DAF > 15%; and bottom row (I–L), fixed mutations. A, E, I: exons (inframe indels and missense substitutions); B, F, J: intergenic regions; C, G, K: long (>300 nt) introns; and D, H, L: short (70–300 nt) introns. Light gray, insertions; dark gray, deletions; yellow, amino acid substitutions; and blue, single-nucleotide substitutions in noncoding regions. Broken lines show the expected values if polymorphism and the rate of divergence in the compartment were the same as in the short introns. In each panel, the left vertical axis shows the number of indels, and the right vertical axis shows the number of single-nucleotide substitutions.