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. 2013 Feb 21;5(3):542–558. doi: 10.1093/gbe/evt027

Table 1.

Main Features of the 14 Sinorhizobium meliloti Genomesa

Strains
1A42 5A14 A0641M A0643DD AE608H AK11 AK75 C0431A C0438LL H1 Rm1021 AK83 BL225C SM11
General stats
    Length (bp) 7,162,724 8,942,552 7,953,713 7,351,905 7,347,181 6,843,938 6,992,595 7,086,830 7,064,773 6,923,151 6,691,694 7,140,471 6,978,785 7,499,157
    G + C content 62.02 61.98 61.88 61.84 62.00 62.03 61.86 61.96 61.96 61.96 0.61 0.62 0.62 61.91
    Coding % 85.25 85.57 85.17 85.28 85.46 85.75 85.28 85.20 85.44 85.11 86.13 82.53 84.56 86.40
    Coding 6,106,284 7,652,148 6,774,171 6,269,850 6,279,117 5,868,819 5,963,196 6,037,653 6,035,811 5,892,396 5,763,546 5,893,086 5,901,528 6,479,490
    ORFs 7,374 8,735 8,411 7,771 7,197 6,895 7,555 7,386 7,242 6,993 6,218 6,518 6,359 7,428
    rRNA 6 24 9 4 18 2 5 2 5 9 9 9 9 9
    tRNA 56 78 63 51 63 47 56 48 52 52 54 56 55 56
Annotation stats (%)b
    No function 30.47 30.02 34.70 34.15 31.22 28.66 31.41 31.02 31.61 29.73 23.72 28.91 25.93 32.77
    ORFans 3.38 3.57 3.67 3.35 1.92 3.16 3.45 2.40 3.02 2.89 1.74 2.75 0.30 0.70
    COG 69.53 69.98 65.30 65.85 68.78 71.34 68.59 68.98 68.39 70.27 76.28 71.09 74.07 67.23
    Interpro 87.86 86.14 84.65 85.28 85.24 88.69 87.66 85.96 86.33 88.15 88.68 84.84 87.42 81.35
    GO 62.19 63.18 59.09 59.85 62.05 63.90 61.69 61.72 61.39 62.81 67.88 64.32 66.06 61.16
    KEGG 44.36 45.20 41.31 41.56 44.69 45.82 43.35 43.39 43.84 44.96 50.63 46.59 48.51 43.09
    Rhizobasec 87.32 78.95 83.21 84.00 84.80 88.70 87.40 86.79 85.97 88.07 92.23 87.48 90.64 84.05
Replicon sizes (bp)
    Chromosome 3,731,100 4,990,772 4,063,405 3,643,054 3,891,677 3,572,765 3,447,294 3,613,238 3,588,400 3,558,302 3,650,000 3,820,000 3,670,000 3,908,022
    Chromid pSymB 1,588,418 1,878,443 1,754,039 1,593,848 1,630,437 1,565,308 1,647,631 1,558,480 1,626,313 1,603,718 1,680,000 1,680,000 1,690,000 1,632,395
    Megaplasmid pSymA 1,396,116 1,506,164 1,457,555 1,307,958 1,285,253 1,387,542 1,518,412 1,389,865 1,313,050 1,374,799 1,350,000 1,310,000 1,610,000 1,633,319
    pSINME01 209,195 232,672 111,645 136,588 125,681 109,990 76,265 112,338 94,450 127,226 260,000
    pSINME02 11,278 25,905 7,018 70,000
    pSmeSM11b 140,640 178,756 63,273 122,560 132,879 11,263 33,722 71,081 13,413 181,251
    pSmeSM11a 14,949 3,811 232,455 19,702 14,801 3,810 144,170
    Not mapped 82,306 155,746 499,985 304,164 281,255 151,462 269,272 398,109 360,652 245,693

aThe general statistics and the putative mapping of reads to the six replicons present in the completely sequenced genomes (Rm1021, AK83, BL225C, and SM11) are reported.

bPercentage on total ORFs.

cRm1021 is excluded.