Table 3.
Indels Occurring in the 3'-End of Blochmannia chromaiodes and B. pennsylvanicus Genes
| Gene | Indel Size (bp) | Repeat Context of Indelb | Effect of Indela |
||
|---|---|---|---|---|---|
| Difference in Protein Length (aa) | Amino Acid Substitutions | Nucleotide Substitutions | |||
| yraL/rsmI | 1 | 2 G hp | 5 | 1 | 0 |
| psd | 1 | 8 A hp | 3 | 1 | 2 |
| ftsQ | 1 | 2 A hp | 1 | 3 | 0 |
| defc | 2 | 5 AT mSSR | 0 | 0 | 0 |
| ahpCc | 4 | 2 TAAG mSSR | 0 | 0 | 0 |
| ribE | 1 | 4 T hp | 1 | 3 | 1 |
| ubiG | 1 | 7 A hp | 4 | 1 | 0 |
| nuoA | 1 | 8 A hp | 13 | 3 | 0 |
| aroC | 1 | 6 A hp | 5 | 1 | 0 |
| ureG | 2 | None | 3 | 3 | 3 |
| ispG | 1 | 4 C hp | 1 | 6 | 1 |
| rplJ | 1 | 7 A hp | 2 | 1 | 0 |
| rplK | 1 | 2 T hp | 1 | 0 | 0 |
| gpsA | 1 | 6 A hp | 2 | 3 | 0 |
| metA | 1 | 4 A hp | 4 | 2 | 1 |
aConsidering the region from the indel to the end of the longest gene sequence.
bhp refers to homopolymers, and mSSR refers to multimeric simple sequence repeats.
cBecause this indel comprises a complete repeat unit at the exact end of the gene, there is no detectable effect on the gene or protein sequence.