Table 1.

H1-ES ChIP-seq enrichment in predicted promoter and enhancer regions.

Promoters
Factor	TreeHMM		ChromHMM
	All	Unique	All	Unique
Taf1	32,069 (41.6x)	1,489 (15.2x)	35,082 (26.0x)	4,502 (6.7x)
Oct4	4,980 (23.8x)	231 (8.7x)	6,932 (19x)	2,183 (12x)
Klf4	2,622 (18.1x)	105 (5.7x)	3,819 (15.1x)	1,302 (10.3x)
p300	141 (1.0x)	16 (0.9x)	1,597 (6.4x)	1,472 (11.8x)
Nanog	1,556 (1.5x)	227 (1.7x)	8,650 (4.7x)	7,321 (7.7x)
Sox2	412 (1.6x)	63 (2.0x)	2,509 (5.7x)	2,160 (9.8x)
Enhancers
Factor	TreeHMM		ChromHMM
	All	Unique	All	Unique
Taf1	8,095 (2.5x)	4,293 (4.4x)	5,611 (2.2x)	1,809 (5.3x)
Oct4	3,914 (4.5x)	2,060 (7.8x)	2,274 (3.3x)	420 (4.5x)
Klf4	2,143 (3.6x)	1,294 (7.1x)	1,003 (2.1x)	154 (2.4x)
p300	7,253 (12.2x)	1,517 (8.4x)	5,861 (12.2x)	125 (2.0x)
Nanog	39,829 (9.1x)	7,941 (6.0x)	33,561 (9.6x)	1,673 (3.5x)
Sox2	9,786 (9.4x)	2,185 (6.9x)	7,952 (9.5x)	351 (3.1x)