Table 1.
Promoters | ||||
---|---|---|---|---|
Factor | TreeHMM | ChromHMM | ||
All | Unique | All | Unique | |
Taf1 | 32,069 (41.6x) | 1,489 (15.2x) | 35,082 (26.0x) | 4,502 (6.7x) |
Oct4 | 4,980 (23.8x) | 231 (8.7x) | 6,932 (19x) | 2,183 (12x) |
Klf4 | 2,622 (18.1x) | 105 (5.7x) | 3,819 (15.1x) | 1,302 (10.3x) |
p300 | 141 (1.0x) | 16 (0.9x) | 1,597 (6.4x) | 1,472 (11.8x) |
Nanog | 1,556 (1.5x) | 227 (1.7x) | 8,650 (4.7x) | 7,321 (7.7x) |
Sox2 | 412 (1.6x) | 63 (2.0x) | 2,509 (5.7x) | 2,160 (9.8x) |
Enhancers | ||||
Factor | TreeHMM | ChromHMM | ||
All | Unique | All | Unique | |
Taf1 | 8,095 (2.5x) | 4,293 (4.4x) | 5,611 (2.2x) | 1,809 (5.3x) |
Oct4 | 3,914 (4.5x) | 2,060 (7.8x) | 2,274 (3.3x) | 420 (4.5x) |
Klf4 | 2,143 (3.6x) | 1,294 (7.1x) | 1,003 (2.1x) | 154 (2.4x) |
p300 | 7,253 (12.2x) | 1,517 (8.4x) | 5,861 (12.2x) | 125 (2.0x) |
Nanog | 39,829 (9.1x) | 7,941 (6.0x) | 33,561 (9.6x) | 1,673 (3.5x) |
Sox2 | 9,786 (9.4x) | 2,185 (6.9x) | 7,952 (9.5x) | 351 (3.1x) |