Table 2.

Performance of CLASS with alternate exon data.

Set	Transcripts	Match_ref	Match_pred	Recall	Precision
Paired-end reads
CLASS_IsoCEM	541	279	293	0.499	0.542
CLASS_Cufflinks	744	343	389	0.614	0.523
CLASS_Scripture	622	297	325	0.531	0.523
Single-end reads
CLASS_IsoCEM	614	286	311	0.512	0.507
CLASS_Cufflinks	666	366	436	0.655	0.655
CLASS_Scripture	568	303	361	0.542	0.636