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. Author manuscript; available in PMC: 2013 Apr 11.
Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2012 Apr 9;0(4):445–455. doi: 10.1002/ajmg.b.32048

TABLE I.

Results of FBAT, MQLS, and LODPAL Analyses

Marker cM LOD Informative families—FBAT FBAT P-value MQLS P-value Major/minor Allelea Nucleotide Allele freq.
Gene
Affected Unaffected
rs7522166 164.75 0.089 23 0.629 0.233 2 C 0.478 0.523 COPA
rs12745476 167.01 0.024 18 0.709 0.529 1 C 0.774 0.785 SDHC
rs2819318 168.15 0.033 21 0.779 0.554 1 C 0.552 0.560 NOS1AP
rs1509024 170.13 0.435 27 0.148 0.250 1 G 0.724 0.705 NUF2
rs1387389 173.39 1.771 25 0.455 0.344 1 C 0.687 0.723 PBX1
rs7517175 174.66 2.676 27 0.366 0.129 1 T 0.537 0.504 UCK2
rs12076250 176.07 3.250 24 0.135 0.152 1 C 0.600 0.547 GPA33
rs1229355 177.46 3.193 26 0.915 0.979 1 T 0.542 0.563 RCSD1
rs3820403 178.71 3.471 20 0.220 0.834 1 A 0.629 0.593 TBX19
rs10800382 179.46 3.459 30 0.238 0.376 1 A 0.582 0.516
rs12143193 180.03 3.262 19 0.205 0.367 1 T 0.684 0.642 NME7
rs603246 180.76 2.876 26 0.609 0.400 1 G 0.612 0.591 KIFAP3
rs913257 181.51 2.926 25 0.851 0.477 1 A 0.498 0.523 FLJ11752
rs1920142 182.01 2.660 25 0.359 0.409 2 C 0.343 0.356 C1orf129
rs2272810 182.46 2.557 26 0.864 0.458 2 A 0.490 0.485 BAT2D1
rs2208370 182.79 2.572 17 0.726 0.842 1 G 0.612 0.623 DNM3
rs1063412 183.12 2.650 29 0.970 0.302 1 T 0.525 0.609 PIGC
rs10489273 183.53 2.916 24 0.676 0.584 1 G 0.570 0.557
rs10912624 183.86 2.817 20 0.501 0.599 1 T 0.780 0.797 SLC9A11
rs6678286 184.23 3.048 19 0.248 0.227 1 A 0.721 0.764 RABGAP1L
rs4650666 184.62 2.589 21 0.014 0.802 1 A 0.610 0.617 RABGAP1L
rs860907 185.00 2.390 26 0.992 0.199 1 G 0.622 0.650 TNR
rs4409605 185.58 2.212 29 0.382 0.836 1 A 0.580 0.590 RFWD2
rs6425386 186.10 2.039 22 0.480 0.316 2 T 0.403 0.377 PAPPA2
rs10798463 186.22 2.032 27 0.559 0.620 1 A 0.704 0.728 PAPPA2
rs7528287 186.33 2.034 30 0.587 0.323 1 G 0.620 0.663 PAPPA2
rs6413830 186.44 2.035 22 0.828 0.365 1 G 0.597 0.547 ASTN1
rs2281180 186.47 2.035 17 0.677 0.852 1 C 0.830 0.862 ASTN1
rs6680908 186.47 2.035 7 NA 0.227 1 C 0.910 0.937 ASTN1
rs974299 186.49 2.035 28 0.248 0.105 1 C 0.525 0.469 ASTN1
rs4652208 186.52 2.035 27 0.426 0.321 2 C 0.498 0.457 ASTN1
rs227987 186.53 2.035 27 0.185 0.074 1 T 0.530 0.472 ASTN1
rs228008 186.56 1.943 26 0.012 0.001 1 G 0.652 0.547 ASTN1
rs6668092 186.57 1.874 25 0.021 0.002 1 C 0.637 0.532 ASTN1
rs172917 186.58 1.826 29 0.027 0.003 1 G 0.652 0.547 ASTN1
rs10798496 186.58 1.826 28 0.128 0.002 1 C 0.500 0.421 ASTN1
rs6667588 186.60 1.544 33 0.134 0.030 1 G 0.545 0.508 ASTN1
rs6683648 186.63 1.450 23 0.778 0.592 1 A 0.512 0.535 ASTN1
rs12141039 186.66 1.343 30 0.147 0.312 1 T 0.635 0.661 ASTN1
rs982875 186.76 1.458 27 0.059 0.429 1 C 0.528 0.528 FAM5B
rs9425456 186.85 2.453 26 0.243 0.388 1 C 0.503 0.548
rs10732999 186.94 1.953 21 0.007 0.184 1 G 0.719 0.693
rs10913473 187.31 0.662 22 0.194 0.087 1 T 0.547 0.563 LZTR2
rs4650995 187.66 0.560 23 0.986 0.459 1 T 0.555 0.560 C1orf220
rs2816187 187.97 0.469 22 0.408 0.962 1 C 0.614 0.646 ABL2
rs11578278 188.18 0.480 28 0.984 0.632 1 C 0.639 0.673 TDRD5
rs7528949 188.47 0.458 24 0.611 0.635 1 G 0.557 0.540 LHX4
rs3761903 189.08 0.611 30 0.967 0.699 1 C 0.527 0.548 XPR1
rs679931 189.91 0.612 20 0.684 0.711 1 A 0.653 0.650 CACNA1E
rs6700658 190.66 0.465 19 0.791 0.367 1 C 0.557 0.595
rs672527 191.50 0.286 21 0.227 0.910 1 C 0.702 0.701 RNASEL
rs10911232 192.21 0.248 26 0.332 0.098 1 C 0.557 0.599 LAMC1
rs3820691 192.70 0.207 22 0.787 0.410 1 T 0.525 0.524 NCF1
rs732812 193.15 0.206 29 0.557 0.796 1 T 0.532 0.532
rs726427 193.58 0.227 22 0.994 0.453 1 C 0.542 0.598 EDEM3
rs10911704 194.04 0.225 26 0.322 0.386 1 T 0.575 0.598
rs16824765 194.39 0.219 19 0.171 0.433 1 C 0.731 0.701 HMCN1
rs16825295 194.61 0.194 23 0.895 0.867 1 C 0.592 0.602 C1ord27
rs7542180 194.94 0.154 17 0.880 0.866 2 G 0.500 0.480 PLA2G4A
a

1, major allele and 2, minor allele (designation based on NCBI allele frequencies European Caucasians).