TABLE I.
Results of FBAT, MQLS, and LODPAL Analyses
Marker | cM | LOD | Informative families—FBAT | FBAT P-value | MQLS P-value | Major/minor Allelea | Nucleotide | Allele freq.
|
Gene | |
---|---|---|---|---|---|---|---|---|---|---|
Affected | Unaffected | |||||||||
rs7522166 | 164.75 | 0.089 | 23 | 0.629 | 0.233 | 2 | C | 0.478 | 0.523 | COPA |
rs12745476 | 167.01 | 0.024 | 18 | 0.709 | 0.529 | 1 | C | 0.774 | 0.785 | SDHC |
rs2819318 | 168.15 | 0.033 | 21 | 0.779 | 0.554 | 1 | C | 0.552 | 0.560 | NOS1AP |
rs1509024 | 170.13 | 0.435 | 27 | 0.148 | 0.250 | 1 | G | 0.724 | 0.705 | NUF2 |
rs1387389 | 173.39 | 1.771 | 25 | 0.455 | 0.344 | 1 | C | 0.687 | 0.723 | PBX1 |
rs7517175 | 174.66 | 2.676 | 27 | 0.366 | 0.129 | 1 | T | 0.537 | 0.504 | UCK2 |
rs12076250 | 176.07 | 3.250 | 24 | 0.135 | 0.152 | 1 | C | 0.600 | 0.547 | GPA33 |
rs1229355 | 177.46 | 3.193 | 26 | 0.915 | 0.979 | 1 | T | 0.542 | 0.563 | RCSD1 |
rs3820403 | 178.71 | 3.471 | 20 | 0.220 | 0.834 | 1 | A | 0.629 | 0.593 | TBX19 |
rs10800382 | 179.46 | 3.459 | 30 | 0.238 | 0.376 | 1 | A | 0.582 | 0.516 | |
rs12143193 | 180.03 | 3.262 | 19 | 0.205 | 0.367 | 1 | T | 0.684 | 0.642 | NME7 |
rs603246 | 180.76 | 2.876 | 26 | 0.609 | 0.400 | 1 | G | 0.612 | 0.591 | KIFAP3 |
rs913257 | 181.51 | 2.926 | 25 | 0.851 | 0.477 | 1 | A | 0.498 | 0.523 | FLJ11752 |
rs1920142 | 182.01 | 2.660 | 25 | 0.359 | 0.409 | 2 | C | 0.343 | 0.356 | C1orf129 |
rs2272810 | 182.46 | 2.557 | 26 | 0.864 | 0.458 | 2 | A | 0.490 | 0.485 | BAT2D1 |
rs2208370 | 182.79 | 2.572 | 17 | 0.726 | 0.842 | 1 | G | 0.612 | 0.623 | DNM3 |
rs1063412 | 183.12 | 2.650 | 29 | 0.970 | 0.302 | 1 | T | 0.525 | 0.609 | PIGC |
rs10489273 | 183.53 | 2.916 | 24 | 0.676 | 0.584 | 1 | G | 0.570 | 0.557 | |
rs10912624 | 183.86 | 2.817 | 20 | 0.501 | 0.599 | 1 | T | 0.780 | 0.797 | SLC9A11 |
rs6678286 | 184.23 | 3.048 | 19 | 0.248 | 0.227 | 1 | A | 0.721 | 0.764 | RABGAP1L |
rs4650666 | 184.62 | 2.589 | 21 | 0.014 | 0.802 | 1 | A | 0.610 | 0.617 | RABGAP1L |
rs860907 | 185.00 | 2.390 | 26 | 0.992 | 0.199 | 1 | G | 0.622 | 0.650 | TNR |
rs4409605 | 185.58 | 2.212 | 29 | 0.382 | 0.836 | 1 | A | 0.580 | 0.590 | RFWD2 |
rs6425386 | 186.10 | 2.039 | 22 | 0.480 | 0.316 | 2 | T | 0.403 | 0.377 | PAPPA2 |
rs10798463 | 186.22 | 2.032 | 27 | 0.559 | 0.620 | 1 | A | 0.704 | 0.728 | PAPPA2 |
rs7528287 | 186.33 | 2.034 | 30 | 0.587 | 0.323 | 1 | G | 0.620 | 0.663 | PAPPA2 |
rs6413830 | 186.44 | 2.035 | 22 | 0.828 | 0.365 | 1 | G | 0.597 | 0.547 | ASTN1 |
rs2281180 | 186.47 | 2.035 | 17 | 0.677 | 0.852 | 1 | C | 0.830 | 0.862 | ASTN1 |
rs6680908 | 186.47 | 2.035 | 7 | NA | 0.227 | 1 | C | 0.910 | 0.937 | ASTN1 |
rs974299 | 186.49 | 2.035 | 28 | 0.248 | 0.105 | 1 | C | 0.525 | 0.469 | ASTN1 |
rs4652208 | 186.52 | 2.035 | 27 | 0.426 | 0.321 | 2 | C | 0.498 | 0.457 | ASTN1 |
rs227987 | 186.53 | 2.035 | 27 | 0.185 | 0.074 | 1 | T | 0.530 | 0.472 | ASTN1 |
rs228008 | 186.56 | 1.943 | 26 | 0.012 | 0.001 | 1 | G | 0.652 | 0.547 | ASTN1 |
rs6668092 | 186.57 | 1.874 | 25 | 0.021 | 0.002 | 1 | C | 0.637 | 0.532 | ASTN1 |
rs172917 | 186.58 | 1.826 | 29 | 0.027 | 0.003 | 1 | G | 0.652 | 0.547 | ASTN1 |
rs10798496 | 186.58 | 1.826 | 28 | 0.128 | 0.002 | 1 | C | 0.500 | 0.421 | ASTN1 |
rs6667588 | 186.60 | 1.544 | 33 | 0.134 | 0.030 | 1 | G | 0.545 | 0.508 | ASTN1 |
rs6683648 | 186.63 | 1.450 | 23 | 0.778 | 0.592 | 1 | A | 0.512 | 0.535 | ASTN1 |
rs12141039 | 186.66 | 1.343 | 30 | 0.147 | 0.312 | 1 | T | 0.635 | 0.661 | ASTN1 |
rs982875 | 186.76 | 1.458 | 27 | 0.059 | 0.429 | 1 | C | 0.528 | 0.528 | FAM5B |
rs9425456 | 186.85 | 2.453 | 26 | 0.243 | 0.388 | 1 | C | 0.503 | 0.548 | |
rs10732999 | 186.94 | 1.953 | 21 | 0.007 | 0.184 | 1 | G | 0.719 | 0.693 | |
rs10913473 | 187.31 | 0.662 | 22 | 0.194 | 0.087 | 1 | T | 0.547 | 0.563 | LZTR2 |
rs4650995 | 187.66 | 0.560 | 23 | 0.986 | 0.459 | 1 | T | 0.555 | 0.560 | C1orf220 |
rs2816187 | 187.97 | 0.469 | 22 | 0.408 | 0.962 | 1 | C | 0.614 | 0.646 | ABL2 |
rs11578278 | 188.18 | 0.480 | 28 | 0.984 | 0.632 | 1 | C | 0.639 | 0.673 | TDRD5 |
rs7528949 | 188.47 | 0.458 | 24 | 0.611 | 0.635 | 1 | G | 0.557 | 0.540 | LHX4 |
rs3761903 | 189.08 | 0.611 | 30 | 0.967 | 0.699 | 1 | C | 0.527 | 0.548 | XPR1 |
rs679931 | 189.91 | 0.612 | 20 | 0.684 | 0.711 | 1 | A | 0.653 | 0.650 | CACNA1E |
rs6700658 | 190.66 | 0.465 | 19 | 0.791 | 0.367 | 1 | C | 0.557 | 0.595 | |
rs672527 | 191.50 | 0.286 | 21 | 0.227 | 0.910 | 1 | C | 0.702 | 0.701 | RNASEL |
rs10911232 | 192.21 | 0.248 | 26 | 0.332 | 0.098 | 1 | C | 0.557 | 0.599 | LAMC1 |
rs3820691 | 192.70 | 0.207 | 22 | 0.787 | 0.410 | 1 | T | 0.525 | 0.524 | NCF1 |
rs732812 | 193.15 | 0.206 | 29 | 0.557 | 0.796 | 1 | T | 0.532 | 0.532 | |
rs726427 | 193.58 | 0.227 | 22 | 0.994 | 0.453 | 1 | C | 0.542 | 0.598 | EDEM3 |
rs10911704 | 194.04 | 0.225 | 26 | 0.322 | 0.386 | 1 | T | 0.575 | 0.598 | |
rs16824765 | 194.39 | 0.219 | 19 | 0.171 | 0.433 | 1 | C | 0.731 | 0.701 | HMCN1 |
rs16825295 | 194.61 | 0.194 | 23 | 0.895 | 0.867 | 1 | C | 0.592 | 0.602 | C1ord27 |
rs7542180 | 194.94 | 0.154 | 17 | 0.880 | 0.866 | 2 | G | 0.500 | 0.480 | PLA2G4A |
1, major allele and 2, minor allele (designation based on NCBI allele frequencies European Caucasians).