Table 2. Details of haplotypes recovered in the partial cox1 sequence analyses.

Haplotype	Cluster	GenBank	Codes	ITSg	Host	Region	Haplotype frequency
							Slovakia	Italy	Hungary
Hap1	C	KC455923	ASS1,2,4,5,9,15,19	As	Pig	NE	0.429	0.0769
	C		ASS6		Pig	NE
	C		ASI11	H	Pig	NE
	C		ASI14	As	Pig	NE
	C	JN575632	ASS47		Pig	NE
Hap2	C	KC455924	ASS3, 8	As	Pig	NE	0.0952
Hap3	C	KC455925	ASS7,11,12,18	As	Pig	NE	0.333
	C		ASS10	Al	Pig	NE
	C		ASS16	H	Pig	NE
	C	JN575633	ASS46		Pig	NE
Hap4	C	KC455926	ASS14	As	Pig	NE	0.0476
Hap5	A1	KC455927	ASS20	As	Pig	NE	0.0476	0.615	0.875
	A1		ASU2,4,6,7,10,11,20,21	As	Pig	NE
	A1		ASU5		Pig	NE
	A1		ASU8,9,12,27,28	H	Pig	NE
	A1		ASI3,4,10,15–17	As	Pig	NE
	A1		ASI12	As	Human	NE
	A1		ASI18–26		Pig	NE
	A1		ASR1	As	Human	NE
	A1	AJ968334	ASC18		Pig	E
Hap6	A1	KC455928	ASU1	As	Pig	NE			0.0625
Hap7	B	KC455929	ASI8,9	As	Pig	NE		0.0769
	B	JN575631	ASS48		Human	NE
	B	GU326952	ASB3		Human	NE
	B	AB591804	ASG1		Pig	E
	B	AB591802	ASG2		Pig	NE
	B	AB591805	ASG6		Pig	NE
	B	AB591800	ASG3		Human	NE
	B	AB591798	ASG4		Human	NE
	B	AB591796	ASG5		Human	NE
	B	AB591799	ASG9		Human	NE
	B	AB591797	ASG10		Human	NE
	B	EU582490	ASZ5		Human	E
	B	AJ968342	ASC11		Pig	E
	B	AJ968338	ASC13		Pig	E
	B	AJ968332	ASC14		Human	E
Hap8	A1	KC455930	ASU3	As	Pig	NE			0.0625
Hap9	A1	KC455931	ASI1	As	Pig	NE		0.0385
Hap10	A1	KC455932	ASI2	As	Pig	NE		0.0385
Hap11	A1	KC455933	ASI5	As	Pig	NE		0.115
	A1		ASI6,7	H	Pig	NE
Hap12	A2	KC455934	ASI13		Human	NE		0.0385
	A2	GU326951	ASB1		Pig	E
	A2	GU326949	ASB4		Human	E
	A2	GU326948	ASB7		Human	E
	A2	EU582492	ASZ4		Human	E
	A2	EU582484	ASZ8		Human	E
	A2	EU582497	ASZ10		Human	E
	A2	AJ968336	ASC17		Pig	E
Hap13	A2	GU326954	ASB2		Human	E
Hap14	B	GU326953	ASB5		Human	E
Hap15	A	GU326955	ASB6		Human	E
Hap16	A2	HM602025	ASB8		Pig	E
Hap17	A	AB591803	ASG7		Pig	NE
Hap18	A2	AB591801	ASG8		Human	NE
Hap19	B	AB591795	ASG11		Human	NE
Hap20	A2	EU582498	ASZ1		Human	E
Hap21	A2	EU582496	ASZ2		Human	E
Hap22	A2	EU582494	ASZ3		Human	E
Hap23	A2	EU582488	ASZ6		Human	E
Hap24	B	EU582486	ASZ7		Human	E
Hap25	B	EU582499	ASZ9		Human	E
Hap26	B	EU582493	ASZ11		Human	E
	B	AJ968340	ASC12		Pig	E
Hap27	A2	EU582495	ASZ12		Human	E
Hap28	A1	EU582491	ASZ13		Human	E
Hap29	A2	EU582489	ASZ14		Human	E
Hap30	A2	EU582487	ASZ15		Human	E
Hap31	A2	EU582485	ASZ16		Human	E
Hap32	B	AJ968343	ASC1		Pig	E
Hap33	B	AJ968341	ASC2		Pig	E
Hap34	B	AJ968339	ASC3		Pig	E
Hap35	B	AJ968337	ASC4		Pig	E
Hap36	A1	AJ968335	ASC5		Pig	E
Hap37	A1	AJ968333	ASC6		Human	E
Hap38	B	AJ968331	ASC7		Human	E
Hap39	A1	AJ968329	ASC8		Human	E
Hap40	A	AJ968327	ASC9		Human	E
Hap41	A2	AJ968325	ASC10		Human	E
Hap42	B	AJ968330	ASC15		Human	E
Hap43	A1	AJ968328	ASC16		Human	E
Hap44	A2	AJ968326	ASC19		Human	E
Hap45	A1	AJ968324	ASC20		Human	E
Hap46	B	KC455935	ASP	Al	Human	E

Haplotypes, affiliation to phylogenetic clusters A(A1, A2)-B-C, GenBank accession numbers, codes, genotypes recovered using RFLP approach on ITS ribosomal nuclear amplicons (“suum” genotype: As, “lumbricoides” genotype: Al and “heterozygote” genotype: H), host, region (NE: non-endemic; E: endemic). Haplotypes relative frequencies are reported only for populations of Dataset1.