Table 2.
Number of junctions from ENSEMBL known genes
| Run | PASTA | TopHat | Common | Common/ PASTA | Common /TopHat | ||
|---|---|---|---|---|---|---|---|
| 1 |
Control |
Lane 1 |
128811 |
65117 |
63063 |
0.490 |
0.968 |
| |
|
Lane 3 |
120465 |
67552 |
65252 |
0.542 |
0.966 |
| |
|
Total |
140083 |
86148 |
83674 |
0.597 |
0.971 |
| |
Mutant |
Lane 1 |
129099 |
57615 |
55770 |
0.432 |
0.968 |
| |
|
Lane 2 |
122237 |
67038 |
64517 |
0.528 |
0.962 |
| |
|
Lane 3 |
123860 |
65568 |
63078 |
0.509 |
0.962 |
| |
|
Lane 4 |
142097 |
41084 |
39695 |
0.279 |
0.966 |
| |
|
Total |
163462 |
98757 |
95854 |
0.586 |
0.971 |
| 2 |
Control |
Lane 1 |
130899 |
115751 |
111098 |
0.849 |
0.960 |
| |
|
Lane 2 |
119397 |
94638 |
91672 |
0.768 |
0.969 |
| |
|
Lane 3 |
119950 |
96743 |
93614 |
0.780 |
0.968 |
| |
|
Total |
146117 |
123247 |
118544 |
0.811 |
0.962 |
| |
Mutant |
Lane 1 |
122889 |
99377 |
96287 |
0.784 |
0.969 |
| |
|
Lane 2 |
127854 |
106340 |
102840 |
0.804 |
0.967 |
| |
|
Lane 3 |
132544 |
111252 |
107418 |
0.810 |
0.966 |
| |
|
Lane 4 |
134049 |
111334 |
107571 |
0.802 |
0.966 |
| Total | 156339 | 126177 | 121633 | 0.778 | 0.964 |
This table displays the number of junctions in ENSEMBL known gene models identified by PASTA and TopHat for Run 1 and Run 2 respectively.