Table 5.
Average coverage (in reads/junction) and probability score of junctions in ENSEMBL known genes
| |
|
Known junctions |
Unknown junctions |
||||||
|---|---|---|---|---|---|---|---|---|---|
| Run | Lane id | Junctions | Avg Cov | Avg score | Canonical fraction | Junctions | Avg Cov | Avg score | Canonical fraction |
|
1 |
1 |
127707 |
13.393 |
0.818 |
0.922 |
216559 |
1.872 |
0.222 |
0.125 |
| |
3 |
120058 |
11.559 |
0.817 |
0.933 |
178275 |
1.857 |
0.217 |
0.122 |
| |
5 |
127561 |
14.353 |
0.822 |
0.923 |
266177 |
1.808 |
0.200 |
0.111 |
| |
6 |
121484 |
12.362 |
0.799 |
0.924 |
252970 |
1.737 |
0.178 |
0.1 |
| |
7 |
121641 |
14.724 |
0.799 |
0.921 |
260782 |
2.033 |
0.194 |
0.106 |
| |
8 |
135760 |
18.913 |
0.814 |
0.900 |
374704 |
2.151 |
0.203 |
0.116 |
|
2 |
1 |
127102 |
22.007 |
0.896 |
0.933 |
240424 |
2.120 |
0.403 |
0.146 |
| |
2 |
119385 |
9.819 |
0.903 |
0.961 |
113407 |
1.629 |
0.364 |
0.155 |
| |
3 |
119715 |
10.806 |
0.904 |
0.960 |
137369 |
1.627 |
0.332 |
0.139 |
| |
5 |
122562 |
11.343 |
0.907 |
0.960 |
126883 |
1.676 |
0.394 |
0.158 |
| |
6 |
125888 |
14.778 |
0.909 |
0.955 |
183848 |
1.811 |
0.348 |
0.138 |
| |
7 |
126222 |
19.085 |
0.904 |
0.946 |
252840 |
2.151 |
0.339 |
0.127 |
| 8 | 127674 | 19.007 | 0.895 | 0.932 | 259528 | 2.140 | 0.342 | 0.124 | |
Known Junctions indicates predicted junctions appearing in ENSEMBL known genes, and Unknown Junctions indicates predicted junctions not appearing in ENSEMBL known genes. Only junctions with a maximum coverage of 100 were considered.