Table 4.
Characteristics of repeat elements contained in the Upland cotton BIBAC end sequences (BESs)
| Elements | Number of elements | Length occupied (bp) | Percentage of the BES (%) |
|---|---|---|---|
| Retroelements |
776 |
208,081 |
5.42 |
| LINEs: |
21 |
4,469 |
0.12 |
| L1/CIN4 |
21 |
4,469 |
0.12 |
| LTR elements: |
755 |
203,612 |
5.39 |
| Ty1/Copia |
166 |
40,878 |
1.06 |
| Gypsy/DIRS1 |
578 |
162,030 |
4.22 |
| DNA transposons |
5 |
302 |
0.01 |
| MuDR-IS905 |
3 |
152 |
0.00 |
| Total interspersed repeats |
208,383 |
5.42 |
|
| Small RNA |
131 |
36,531 |
0.95 |
| Simple repeats |
201 |
10,777 |
0.28 |
| Low complexity | 2,289 | 118,328 | 3.08 |