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Analysis methods employed for differential expression detection in this study
| Analysis | Package | Comparison | Assembly |
|---|---|---|---|
| a |
edgeR |
Pairwise |
Midas cichlid |
| b |
DESeq |
Pairwise |
Midas cichlid |
| c |
baySeq |
Pairwise |
Midas cichlid |
| d |
baySeq |
Multiple |
Midas cichlid |
| e |
edgeR |
Pairwise |
Tilapia |
| f |
DESeq |
Pairwise |
Tilapia |
| g |
baySeq |
Pairwise |
Tilapia |
| h | baySeq | Multiple | Tilapia |
