Table 1.

Individual sample characteristics

Individual	Sex	Birth date	Sample	Sampling date	Age at sampling	No. of clone sequences
Caramel	Male	2002	A	2005	3	25
Celine	Female	1995	A	2005	10	25
Coco	Female	1980	A	2004	24	25
Coco*	Female	1980	B	2005	25	25
Gogol	Male	1991	A	2001	10	25
Gogol	Male	1991	B	2008	17	25
Jacobo	Male	1998	A	2004	6	25
Julia*	Female	1970	A	2004	34	25
Kabisha	Female	1977	A	2001	24	25
Kabisha	Female	1977	B	2002	25	25
Kaos	Male	1977	A	2006	29	25
Kinshasa	Female	1990	A	2001	11	25
Kinshasa	Female	1990	B	2007	17	25
Kiriku	Male	2005	A	2008	3	25
Louise	Female	1980	A	2005	25	25
Lula*	Male	2003	A	2007	4	25
Rebecca	Female	1995	A	2002	7	25
Romario*	Male	1999	A	2004	5	25
Romario	Male	1999	B	2008	9	25
Rubra	Female	1970	A	2001	31	25
Rubra	Female	1970	B	2005	35	25
Rubra	Female	1970	C	2008	38	25
Sagu	Male	1989	A	2002	13	25
Sagu	Male	1989	B	2006	17	25
Sagu	Male	1989	C	2008	19	25
Settut*	Female	1996	A	2003	7	25
Shogun	Male	2001	A	2008	7	25
Sumatra	Female	1965	A	2003	38	15
Sumatra	Female	1965	B	2005	40	25
Utan	Male	1994	A	2001	7	25
Utan	Male	1994	B	2005	11	25
Yao	Male	1995	A	2003	8	25
Yucca	Female	1970	A	2002	32	25
Yucca	Female	1970	B	2004	34	25
Zyon	Male	1964	A	2001	37	25
Zyon	Male	1964	B	2006	42	25
Zyon	Male	1964	C	2008	44	25

^aAn asterisk marks samples which have been excluded from statistical analysis of superinfection status in relation to age and sex because of their ambiguous infection status.