TABLE 1.
Interaction | ITC |
SPR |
|||||||
---|---|---|---|---|---|---|---|---|---|
ΔG | ΔH | −TΔS | Stoichiometry | Kd | kon | koff | Kd | χ2 (U value) | |
kcal/mol | kcal/mol | kcal/mol | m−1 s−1 | s−1 | nm | ||||
SinI-SinR | −11.9 | −8.36 ± 0.16 | −3.58a | 1.27 ± 0.01 | ≤10 nm | 2.73 ± 0.01 × 104 | 5 ± 0.06 × 10−5 | 1.83 | 0.12 (5) |
SlrA-SinR | −10.9 | −7.89 ± 0.44 | −2.97a | 0.89 ± 0.02 | ≤10 nm | 2.16 ± 0.01 × 104 | 2.3 ± 0.006 × 10−4 | 10.6 | 40.8 (1) |
SlrR-SinR | N.D. | N.D. | N.D. | N.D. | N.D. | 4.85 ± 0.03 × 103 | 2.3 ± 0.015 × 10−4 | 47.5 | 0.10 (NA) |
SinR-Inverted repeat DNA | −8.77 | 4.33 ± 0.12 | −13.12 | 2.38 ± 0.05 | 360 ± 122 nm | 1 × 105b | 2 × 10−2b | 270 ± 50 | N.D. |
SinR-Single site DNA | −6.68 | −5.78 ± 0.11 | 0.90 | 1.07 ± 0.01 | 12.5 ± 1.2 μm | N.D. | N.D. | N.D. | N.D. |
SinR-Tandem site DNA | −6.18 | 1.66 ± 0.13 | −7.84 | ∼2 | 30 ± 7 μm | N.D. | N.D. | N.D. | N.D. |
a Kd measured by SPR was used for fitting ITC data to obtain ΔS.
b Values estimated by simulation software from data of Colledge et al. (11).