Table 2.
Genes upregulated in the ΔEF2638 mutant
| ORF | RAST annotation | log2 of ratioa |
|---|---|---|
| EF0094 | Formate/nitrite transporter family protein | 2.75 |
| EF0255 | l-Lactate dehydrogenase (EC 1.1.1.27) | 1.89 |
| EF0475 | Ferrous iron transport protein A | 2.25 |
| EF0634 | Decarboxylase, putative | 2.75 |
| EF0635 | Amino acid permease family protein | 2.83 |
| EF0900 | Alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (EC 1.2.1.10) | 2.11 |
| EF1225 | Hypothetical similar to thiamine biosynthesis lipoprotein ApbE | 4.73 |
| EF1226 | Fumarate reductase, flavoprotein subunit precursor (EC 1.3.99.1) | 5.18 |
| EF1227 | Fumarate reductase, flavoprotein subunit precursor (EC 1.3.99.1) | 3.51 |
| EF1326 | Transcriptional regulator, TetR family | 2.28 |
| EF1327 | BadF/BadG/BcrA/BcrD ATPase family protein | 4.89 |
| EF1491 | Ribonucleotide reduction protein NrdI | 2.26 |
| EF1612 | Pyruvate formate-lyase-activating enzyme (EC 1.97.1.4) | 3.87 |
| EF1613 | Pyruvate formate-lyase (EC 2.3.1.54) | 2.36 |
| EF1825 | Conserved domain protein | 3.21 |
| EF1826 | Alcohol dehydrogenase (EC 1.1.1.1) | 2.63 |
| EF2048 | rRNA large subunit methyltransferase N (EC 2.1.1.-) | 2.33 |
| EF2637 | Abortive infection protein | 3.06 |
| EF2754 | Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | 2.22 |
| EF2755 | Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) | 2.16 |
| EF2933 | Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) | 2.46 |
| EF3245 | Cell envelope-associated acid phosphatase | 2.77 |
| EF3198b | Lipoprotein, YaeC family | −2.07 |
a
The value is log2 of the ratio (ΔEF2638 mutant/wild type) of averaged expression values for the two strains.
b
The single gene with a 2-fold-lower expression in the absence of EF2638.