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. 2013 Feb 17;29(8):1026–1034. doi: 10.1093/bioinformatics/btt075

Table 1.

Summary of the detected hotspots

Hotspot index Sizea Locib GO categoryc Hitsd t-test (all)e t-test (hits)f
NO. 1 32 Chr XII:1056103 Telomere maintenance via recombinationInline graphic 5 20 5
NO. 2 27 Chr IV:1525327 Telomere maintenance via recombinationInline graphic 4 5 3
NO. 3 26 Chr XII:662627 Sterol metabolic processInline graphic 7 25 7
NO. 4 24 Chr I:52859 Fatty acid metabolic processInline graphic 10 12 6
NO. 5 24 Chr XV:202370 Response to abiotic stimulusInline graphic 10 11 6
NO. 6 23 Chr III:201166 Response to pheromoneInline graphic 7 16 6
NO. 7 21 Chr VII:402833 Protein foldingInline graphic 8 4 3
NO. 8 19 Chr I:7298 Fatty acid beta-oxidationInline graphic 5 13 4
NO. 9 18 Chr IV:33214 Response to toxinInline graphic 5 0 0
NO. 10 16 Chr II:562415 CytokinesisInline graphic 8 15 8
NO. 11 16 Chr X:698149 3
NO. 12 16 Chr XV:132423 13
NO. 13 15 Chr XIII:843356 Organic acid transportInline graphic 5 0 0
NO. 14 15 Chr V:395442 3
NO. 15 15 Chr XVI:486637 Sexual reproductionInline graphic 6 8 4

aNumber of genes associated with the hotspot. bThe chromosome position of hotspot. cThe most significant GO category enriched in the associated gene set. The enrichment test was performed using DAVID (Huang da and Lempicki, 2008). The gene function is defined by GO Fat category. DAVID outputs the Benjamini–Hochberg adjusted P-value. Adjusted P-values are indicated by Inline graphic, where Inline graphic dNumber of associated genes that are functional in the enriched GO category. eNumber of associated genes that can also be identified using t-test. fNumber of associated genes that are functional in the enriched GO category and can also be identified using t-test. Two novel hotspots (NO. 9 and NO. 13) which cannot be detected by standard linear regression are in bold.