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Isoform simulation results
| Methods | Power (%) | FDR (%) |
|---|---|---|
| Cuffdiff2 | 33.6 | 0.2 |
| Cuffdiff2(OK) | 44.4 | 0.2 |
| EBSeq | 72.2 | 8.2 |
The empirical power and FDR for EBSeq and Cuffdiff2 averaged across 100 Sim I simulations where target FDR was set at 5%. Cuffdiff2 deems some isoforms unacceptable prior to analysis. Operating characteristics are reported overall, as well as within those deemed acceptable (‘OK’) by Cuffdiff2. Standard errors on average power (FDR) were <2% (0.2%) and are not shown.
