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. 2013 Feb 23;29(8):1011–1017. doi: 10.1093/bioinformatics/btt095

Fig. 3.

Fig. 3.

Example showing how to compute the guidescore for two alternative (sets of) trees computed using different approaches. In this case, the score is computed considering the gap parsimony trees inferred after forcing ClustalW2 to use the canonical topology and an alternative one with the maximum split-distance to the canonical tree