Table 7. Table 7. Examples of genes (ORF(j)) regulated by cell size (constitutive expression) ¶.
BCG-Pasteur (H37Rv) | Msmeg | ||||
gene | locus tag§ | r(j) value | locus tag | r(f) value | |
ORFs involved in DNA replication | |||||
parB | BCG_0023c (Rv3917c) | 0.90 | MSMEG_6938 | 1.25 | |
parA | BCG_0024c (Rv3918c) | 0.96 | MSMEG_6939 | 0.74 | |
dnaA | BCG_0031 (Rv0001) | nr | MSMEG_6947 | 0.98 | |
dnaN | BCG_0032 (Rv0002) | 0.75 | MSMEG_0010 | 0.89 | |
dnaJ1 | BCG_0390 (Rv0351) | nr | MSMEG_4504 | 0.89 | |
dinX | BCG_1589 (Rv1537) | 1.06 | MSMEG_3172 | 0.87 | |
dnaE1 | BCG_1600 (Rv1547) | 0.99 | MSMEG_3178 | 0.91 | |
BCG_2429c (Rv2413c) | 1.18 | MSMEG_4572 | 0.82 | ||
ssb | BCG_2498 (Rv2478c) | 1.00 | MSMEG_4701 | 1.05 | |
dnaE2 | BCG_3442c (Rv3370c) | 1.71 | MSMEG_1633 | 0.95 | |
dnaQ | BCG_3771c (Rv3711c) | 1.06 | MSMEG_6275 | 1.25 | |
BCG_3781c (Rv3721c) | 1.46 | MSMEG_6285 | 0.47 | ||
Not in BCG Pasteur (Rv1985c) | MSMEG_0548 | 0.96 | |||
ORFs involved in cell wall formation | |||||
murA | BCG_1376 (Rv1315) | 0.89 | MSMEC_4932 | 0.95 | |
murI | BCG_1400 (Rv1338) | 1.06 | MSMEC_4903 | 1.01 | |
ftsZ | BCG_2167c (Rv2150c) | 1.00 | MSMEG_4222 | 1.09 | |
ftsK | BCG_2498 (Rv2478c) | 0.88 | MSMEG_2690 | 0.93 | |
ORFs involved in DNA repair | |||||
recF | BCG_0033 (Rv0003) | 0.89 | MSMEG_0003 | 0.86 | |
recD | BCG_0675c (Rv0629c) | 1.38 | MSMEG_1325 | 0.83 | |
recB | BCG_0677c (Rv0630c) | nr | MSMEG_1327 | 1.06 | |
recC | BCG_0678c (Rv0631c) | 1.43 | MSMEG_1328 | 0.81 | |
BCG_1217 (Rv1156) | 0.70 | MSMEG_5156 | 1.05 | ||
recN | BCG_1734 (Rv1696) | 1.38 | MSMEG_3749 | 0.91 | |
BCG_2136 (Rv2119) | 1.00 | MSMEG_3907 | 0.93 | ||
BCG_2744 (Rv2731) | 0.89 | MSMEG_2731 | 1.13 | ||
recX | BCG_2749c (Rv2736c) | 1.15 | MSMEG_2724 | 0.71 | |
recA | BCG_2750c (Rv2737c) | 0.87 | MSMEG_2723 | 1.18 | |
dinB | BCG_3081 (Rv3056) | 1.34 | MSMEG_2294 | 1.07 | |
radA | BCG_3650 (Rv3585) | 1.27 | MSMEG_6079 | 0.80 | |
recQ | Not applicable | MSMEG_5397 | 0.85 | ||
Other ORFs regulated by cell size | |||||
rpoB | BCG_0716 (Rv0667) | 1.11 | MSMEG_1367 | 1.33 | |
rpoC | BCG_0717 (Rv0668) | 0.90 | MSMEG_1368 | 0.96 | |
BCG_2228 (Rv2212) | 1.22 | MSMEG_4279 | 0.94 | ||
nusB | BCG_2555c (Rv2533c) | 1.14 | MSMEG_3036 | 0.86 | |
nusA | BCG_2861c (Rv2841c) | 0.93 | MSMEG_2625 | 1.10 |
, see equation (11) for definition; §, the loci numbers corresponding to M. tuberculosis H37Rv are also indicated between brackets, as it appears in [11]; nr, no result.