Table 3.
Annotation summary
| Scaffolds mapped to: |
Scaffolds |
mRNAs
+
|
Repeats |
|||||
|---|---|---|---|---|---|---|---|---|
| N | (%) # | N | (%)* | % of the scaffold | N | (%)* | % of the scaffold | |
|
G. gallus genome only |
53,345 |
22% |
1,256 |
5% |
8% |
88,157 |
76% |
7.7% |
| Unmapped |
105,030 |
43% |
1,429 |
2% |
22% |
125,470 |
48% |
19.4% |
|
T. guttata genome only |
26,078 |
11% |
4,206 |
21% |
7% |
87,592 |
93% |
2.1% |
| Mismatched |
54,621 |
22% |
12,030 |
27% |
2% |
266,478 |
98% |
1.0% |
|
G. gallus and T. guttata |
6,873 |
3% |
1,426 |
26% |
3% |
32,994 |
98% |
1.2% |
| Total | 245,947 | 100% | 20,347 | 11% | 4% | 600,691 | 59% | 4.3% |
+ mRNAs are from G. gallus.
# Percentage values are from total number of scaffolds.
* Percentage values are from the number of scaffolds in that category.