Table 2. Primers used to construct B19 VP1u point mutations and truncated VP1u.
Name | Sequence (5′–3′) | |
Point mutations | ||
Group I (Catalytic network) | ||
VP1u(Y130A) | Forward | CCCGGTACTAACGCTGTTGGGCCTGGC |
Reverse | GCCAGGCCCAACAGCGTTAGTACCGGG | |
Forward | ACTAACTATGTTGCGCCTGGCAATGAG | |
Reverse | CTCATTGCCAGGCGCAACATAGTTAGT | |
Forward | GCAAGGATTCATGACTTTAGGTATAGC | |
Reverse | GCTATACCTAAAGTCATGAATCCTTGC | |
Group II (Binding calcium ions) | ||
VP1u(H153A) | Forward | GCTGCAAGGATTGCTGACTTTAGGTAT |
Reverse | ATACCTAAAGTCAGCAATCCTTGCAGC | |
VP1u(Y157F) | Forward | ATGACTTTAGGTTTAGCCAACTGGCT |
Reverse | AGCCAGTTGGCTAAACCTAAAGTCATG | |
VP1u(Y168F) | Forward | GGAATAAATCCATTTACTCATTGGACT |
Reverse | AGTCCAATGAGTAAATGGATTTATTCC | |
VP1u(D175A) | Forward | TGGACTGTAGCAGCTGAAGAGCTTTTA |
Reverse | TAAAAGCTCTTCAGCTGCTACAGTCCA | |
VP1u(D195A) | Forward | CAAGTAGTAAAAGCCTACTTTACTTTA |
Reverse | TAAAGTAAAGTAGGCTTTTACTACTTG | |
Group III (Phospholipid environment) | ||
VP1u(K162R) | Forward | AGCCAACTGGCTAGGTTGGGAATAAATCCA |
Reverse | TGGATTTATTCCCAACCTAGCCAGTTGGCT | |
Group IV (No-conserved) | ||
VP1u(P133R) | Forward | AACTATGTTGGGCGTGGCAATGAGCTA |
Reverse | TAGCTCATTGCCACGCCCAACATAGTT | |
VP1u(A207Y) | Forward | GCTGCCCCTGTGTACCATTTTCAAGGA |
Reverse | TCCTTGAAAATGGTACACAGGGGCAGC | |
Wild type and truncated VP1u | ||
VP1u(WT) | Forward | CGGGATCCATGAGTAAAGAAAGTGGCAAATG |
Reverse | CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT | |
VP1u(ΔN11) | Forward | CGGGATCCGATGATGAATTTGCTAAAGCTGT |
Reverse | CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT | |
VP1u(ΔN21) | Forward | CGGGATCCCAATTTGTGGAATTTTATGAAAA |
Reverse | CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT | |
VP1u(ΔN42) | Forward | CGGGATCCGATCATTATAATATTTCTTTAGA |
Reverse | CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT | |
VP1u(ΔC6) | Forward | CGGGATCCATGAGTAAAGAAAGTGGCAAATG |
Reverse | CCCAAGCTTCGGCGTTGTAAGCGGGAACTTCCG | |
VP1u(ΔC15) | Forward | CGGGATCCATGAGTAAAGAAAGTGGCAAATG |
Reverse | CCCAAGCTTCACTTCCTTGAAAATGGGCCACAG | |
VP1u(ΔC23) | Forward | CGGGATCCATGAGTAA AGAAAGTGGCAAATG |
Reverse | CCCAAGCTTCGGCAGCTGCACCTTTTAAAGTAT |
All sequences are based on the sequence of the J35 isolate (GenBank accession no. AY386330).
GGATCC is a restriction site of BamHI, AAGCTT is a restriction site of HindIII.