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. 2013 Apr 15;8(4):e61440. doi: 10.1371/journal.pone.0061440

Table 2. Primers used to construct B19 VP1u point mutations and truncated VP1u.

Name Sequence (5′–3′)
Point mutations
Group I (Catalytic network)
VP1u(Y130A) Forward CCCGGTACTAACGCTGTTGGGCCTGGC
Reverse GCCAGGCCCAACAGCGTTAGTACCGGG
Forward ACTAACTATGTTGCGCCTGGCAATGAG
Reverse CTCATTGCCAGGCGCAACATAGTTAGT
Forward GCAAGGATTCATGACTTTAGGTATAGC
Reverse GCTATACCTAAAGTCATGAATCCTTGC
Group II (Binding calcium ions)
VP1u(H153A) Forward GCTGCAAGGATTGCTGACTTTAGGTAT
Reverse ATACCTAAAGTCAGCAATCCTTGCAGC
VP1u(Y157F) Forward ATGACTTTAGGTTTAGCCAACTGGCT
Reverse AGCCAGTTGGCTAAACCTAAAGTCATG
VP1u(Y168F) Forward GGAATAAATCCATTTACTCATTGGACT
Reverse AGTCCAATGAGTAAATGGATTTATTCC
VP1u(D175A) Forward TGGACTGTAGCAGCTGAAGAGCTTTTA
Reverse TAAAAGCTCTTCAGCTGCTACAGTCCA
VP1u(D195A) Forward CAAGTAGTAAAAGCCTACTTTACTTTA
Reverse TAAAGTAAAGTAGGCTTTTACTACTTG
Group III (Phospholipid environment)
VP1u(K162R) Forward AGCCAACTGGCTAGGTTGGGAATAAATCCA
Reverse TGGATTTATTCCCAACCTAGCCAGTTGGCT
Group IV (No-conserved)
VP1u(P133R) Forward AACTATGTTGGGCGTGGCAATGAGCTA
Reverse TAGCTCATTGCCACGCCCAACATAGTT
VP1u(A207Y) Forward GCTGCCCCTGTGTACCATTTTCAAGGA
Reverse TCCTTGAAAATGGTACACAGGGGCAGC
Wild type and truncated VP1u
VP1u(WT) Forward CGGGATCCATGAGTAAAGAAAGTGGCAAATG
Reverse CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT
VP1u(ΔN11) Forward CGGGATCCGATGATGAATTTGCTAAAGCTGT
Reverse CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT
VP1u(ΔN21) Forward CGGGATCCCAATTTGTGGAATTTTATGAAAA
Reverse CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT
VP1u(ΔN42) Forward CGGGATCCGATCATTATAATATTTCTTTAGA
Reverse CCCAAGCTTCCTGCAGAATTAACTGAAGTCATGCT
VP1u(ΔC6) Forward CGGGATCCATGAGTAAAGAAAGTGGCAAATG
Reverse CCCAAGCTTCGGCGTTGTAAGCGGGAACTTCCG
VP1u(ΔC15) Forward CGGGATCCATGAGTAAAGAAAGTGGCAAATG
Reverse CCCAAGCTTCACTTCCTTGAAAATGGGCCACAG
VP1u(ΔC23) Forward CGGGATCCATGAGTAA AGAAAGTGGCAAATG
Reverse CCCAAGCTTCGGCAGCTGCACCTTTTAAAGTAT
a

All sequences are based on the sequence of the J35 isolate (GenBank accession no. AY386330).

b

GGATCC is a restriction site of BamHI, AAGCTT is a restriction site of HindIII.