Table 1.
Complete list of "168-L-specific" genetic variations in CDSs
| 168-L gene | 168-L gene product | Variation | 168 Locus | Effect on 168-L coding |
|---|---|---|---|---|
| MHP168L_010 |
Putative uncharacterized protein |
SNV |
MHP168_010 |
L368A substitution |
| MHP168L_014 |
Fructose-bisphosphate aldolase |
Deletion+SNV |
MHP168_014 |
N-terminal deletion+SNV |
| MHP168L_020 |
ABC transporter ATP-binding protein |
Deletion |
MHP168_020 |
264-aa deletion |
| MHP168L_022 |
Putative uncharacterized protein |
SNV |
MHP168_022 |
S22S substitution |
| MHP168L_030 |
Topoisomerase IV subunit A |
SNV |
MHP168_030 |
K140E substitution |
| MHP168L_033 |
Predicted protein |
Deletion |
MHP168_033 |
N-terminal deletion |
| MHP168L_035 |
hypothetical protein |
SNV |
MHP168_035 |
K177R,A221T substitution |
| MHP168L_058 |
Glycyl-tRNA synthetase |
SNV |
MHP168_058 |
P226P substitution |
| MHP168L_064 |
hypothetical protein |
SNV |
MHP168_064 |
Y552H substitution |
| MHP168L_065 |
Predicted protein |
Deletion |
MHP168_065 |
Frameshift out 20aa |
| MHP168L_066 |
hypothetical protein |
Insertion+SNV |
MHP168_066 |
Frameshift out 42aa; F324S substitution |
| MHP168L_069 |
Chaperone protein dnaK |
SNV |
MHP168_069 |
P407P substitution |
| MHP168L_084 |
Amino acid permease |
SNV |
MHP168_084 |
R13K,T396A substitution |
| MHP168L_085 |
NADH oxidase |
Insertion+SNV |
MHP168_085 |
"TG" insertion; stop; 5aa truncation; E395G substitution |
| MHP168L_086 |
Thymidine phosphorylase |
SNV |
MHP168_086 |
V15F substitution |
| MHP168L_103 |
Outer membrane protein-P95 |
SNV |
MHP168_103 |
Stop;149-aa truncation |
| MHP168L_105 |
ATP-dependent protease binding protein |
SNV |
MHP168_105 |
I159I substitution |
| MHP168L_110 |
Protein p97, cilium adhesin |
SNV |
MHP168_110 |
SNV in repeat region |
| MHP168L_114 |
50S ribosomal protein L2 |
SNV |
MHP168_114 |
A2A substitution |
| MHP168L_127 |
50S ribosomal protein L15 |
SNV |
MHP168_127 |
E95K substitution |
| MHP168L_142 |
Phosphopentomutase |
SNV |
MHP168_142 |
N8I substitution |
| MHP168L_152 |
ribulose-phosphate 3-epimerase |
Deletion+SNV |
MHP168_152 |
I211F substitution |
| MHP168L_167 |
L-lactate dehydrogenase |
SNV |
MHP168_167 |
N204D substitution |
| MHP168L_168 |
Hexosephosphate transport protein |
SNV |
MHP168_168 |
Q122S substitution |
| MHP168L_182 |
Putative uncharacterized protein |
Deletion |
MHP168_182 |
Frameshift;105-aa truncation |
| MHP168L_186 |
Pyruvate dehydrogenase E1-alpha subunit |
SNV |
MHP168_186 |
S194G substitution |
| MHP168L_187 |
Adenine phosphoribosyltransferase |
SNV |
MHP168_188 |
534-aa N-terminal extension |
| MHP168L_198 |
Protein P102 |
SNV |
MHP168_198 |
L677L substitution |
| MHP168L_209 |
ABC transporter ATP-binding protein |
SNV |
MHP168_209 |
K258E substitution |
| MHP168L_212 |
Oligopeptide transport system permease protein |
SNV |
MHP168_212 |
P203S substitution |
| MHP168L_235 |
Putative ICEF Integrative Conjugal Element-II |
SNV |
MHP168_235 |
G192E substitution |
| MHP168L_243 |
Serine hydroxymethyltransferase |
Insertion |
MHP168_243 |
No change |
| MHP168L_264 |
ISMHp1 transposase |
SNV |
MHP168_264 |
S232P,C229R substitution |
| MHP168L_275 |
lipoate-protein ligase A |
SNV |
MHP168_275 |
A179T substitution |
| MHP168L_284 |
Cobalt import ATP-binding protein cbiO 1 |
SNV |
MHP168_284 |
K64E substitution |
| MHP168L_289 |
Cation-transporting P-type ATPase |
SNV |
MHP168_289 |
E100D substitution |
| MHP168L_308 |
putative ABC transporter ATP-binding protein |
SNV |
MHP168_308 |
T708A,M700L substitution |
| MHP168L_311 |
Putative uncharacterized protein |
SNV |
MHP168_311 |
D266E substitution |
| MHP168L_312 |
Putative uncharacterized protein |
Insertion+SNV |
MHP168_312 |
Insertion;R49R,I247L substitution |
| MHP168L_314 |
Putative uncharacterized protein |
Insertion+deletion |
MHP168_314 |
Stop;14-aa truncation |
| MHP168L_322 |
hypothetical protein |
Insertion |
MHP168_322 |
Frameshift;5-aa truncation |
| MHP168L_345 |
Predicted protein |
Deletion |
MHP168_345 |
Frameshift;53-aa truncation |
| MHP168L_355 |
Putative uncharacterized protein |
Insertion |
MHP168_355 |
21-aa N-terminal deletion |
| MHP168L_361 |
hypothetical protein |
SNV |
MHP168_361 |
L265L substitution |
| MHP168L_377 |
Putative uncharacterized protein |
SNV |
MHP168_377 |
E407K substitution |
| MHP168L_378 |
P60-like lipoprotein |
SNV |
MHP168_378 |
S143N substitution |
| MHP168L_379 |
HIT-like protein |
SNV |
MHP168_379 |
D58N substitution |
| MHP168L_381 |
hypothetical protein |
Insertion |
MHP168_381 |
Frameshift |
| MHP168L_386 |
P37-like ABC transporter substrate-binding lipoprotein |
Insertion |
MHP168_386 |
Frameshift out 84aa |
| MHP168L_389 |
Putative membrane lipoprotein |
SNV |
MHP168_389 |
A265S substitution |
| MHP168L_392 |
lipoprotein |
SNV |
MHP168_392 |
T6M substitution |
| MHP168L_394 |
ABC transporter permease protein |
SNV |
MHP168_394 |
A492G substitution |
| MHP168L_400 |
Ribonuclease III |
SNV |
MHP168_400 |
V58I substitution |
| MHP168L_401 |
Putative uncharacterized protein |
Deletion |
MHP168_401 |
Frameshift out 133aa |
| MHP168L_409 |
Putative type III restriction-modification system: methylase |
Deletion |
MHP168_409 |
Frameshift out 171aa |
| MHP168L_412 |
ISMHp1 transposase |
SNV |
MHP168_412 |
G50V substitution |
| MHP168L_413 |
ABC transporter ATP-binding protein |
SNV |
MHP168_413 |
D118Y substitution |
| MHP168L_423 |
Putative uncharacterized protein |
SNV |
MHP168_423 |
Y18S substitution |
| MHP168L_424 |
Lppt protein |
SNV |
MHP168_424 |
L814F substitution |
| MHP168L_434 |
hypothetical protein |
SNV |
MHP168_434 |
W107C substitution |
| MHP168L_444 |
Putative uncharacterized protein |
SNV |
MHP168_444 |
V123A substitution |
| MHP168L_445 |
Putative uncharacterized protein |
Deletion |
MHP168_445 |
3-aa deletion in repeat region |
| MHP168L_454 |
Putative uncharacterized protein |
Insertion+SNV |
MHP168_454 |
L423I substitution |
| MHP168L_455 |
Predicted protein |
Deletion+SNV |
MHP168_455 |
59-aa extension;P51P substitution |
| MHP168L_456 |
Putative uncharacterized protein |
SNV |
MHP168_456 |
substitution |
| MHP168L_457 |
Putative uncharacterized protein |
Insertion+deletion+SNV |
MHP168_457 |
Frameshift;substitution |
| MHP168L_462 |
ABC transporter ATP-binding protein |
SNV |
MHP168_462 |
V219L substitution |
| MHP168L_463 |
ABC transporter permease protein |
SNV |
MHP168_463 |
Amino acid substitution |
| MHP168L_473 |
hypothetical protein |
Insertion |
MHP168_473 |
Frameshift out 84aa |
| MHP168L_482 |
Phosphoenolpyruvate protein phosphotransferase |
SNV |
MHP168_482 |
E562G substitution |
| MHP168L_490 |
hypothetical protein |
Insertion |
MHP168_490 |
Stop;114-aa truncation |
| MHP168L_498 |
Putative uncharacterized protein |
SNV |
MHP168_498 |
D137E substitution |
| MHP168L_503 |
P216 surface protein |
Insertion |
MHP168_503 |
Q repeat insertion |
| MHP168L_504 |
P159 membrane protein |
SNV |
MHP168_504 |
G403D,L375S, G240A substitution |
| MHP168L_505 |
YX1 |
SNV |
MHP168_505 |
V175I substitution |
| MHP168L_506 |
Putative uncharacterized protein |
SNV |
MHP168_506 |
N16N substitution |
| MHP168L_507 |
asparagine synthetase A |
SNV |
MHP168_507 |
I85M substitution |
| MHP168L_510 |
Oligopeptide transport system permease protein |
SNV |
MHP168_510 |
S19S substitution |
| MHP168L_523 |
Xylose ABC transporter ATP-binding protein |
SNV |
MHP168_523 |
S8S substitution |
| MHP168L_531 |
Putative uncharacterized protein |
Deletion+SNV |
MHP168_531 |
Amino acid substitution |
| MHP168L_541 |
Predicted protein |
SNV |
MHP168_541 |
L50L substitution |
| MHP168L_557 |
Potassium uptake protein |
SNV |
MHP168_557 |
D69Y substitution |
| MHP168L_558 |
Potassium uptake protein |
SNV |
MHP168_558 |
H425Y,N477D substitution |
| MHP168L_559 |
hypothetical protein |
SNV |
MHP168_559 |
D1236G substitution |
| MHP168L_567 |
hypothetical protein |
SNV |
MHP168_567 |
D68N substitution |
| MHP168L_571 |
hypothetical protein |
Insertion+deletion+SNV |
MHP168_571 |
Frameshift;amino acid substitution |
| MHP168L_573 |
Putative uncharacterized protein |
Deletion+SNV |
MHP168_573 |
Amino acid substitution;N-terminal extension |
| MHP168L_576 |
ISMHp1 transposase |
SNV |
MHP168_576 |
Amino acid substitution |
| MHP168L_589 |
Membrane nuclease, lipoprotein |
SNV |
MHP168_589 |
S98S substitution |
| MHP168L_596 |
Glycerol-3-phosphate dehydrogenase |
SNV |
MHP168_596 |
L155V substitution |
| MHP168L_600 |
ABC transporter ATP binding protein |
SNV |
MHP168_600 |
P1014L,P1037L substitution |
| MHP168L_606 |
hypothetical protein |
Deletion+SNV |
|
Frameshift;amino acid substitution |
| MHP168L_614 |
ABC transporter xylose-binding lipoprotein |
SNV |
MHP168_614 |
I51V substitution |
| MHP168L_621 |
hypothetical protein |
SNV |
MHP168_621 |
G87G substitution |
| MHP168L_631 |
ABC transporter ATP-binding-Pr1 |
SNV |
MHP168_631 |
R60W substitution |
| MHP168L_638 |
Putative uncharacterized protein |
Insertion+SNV |
MHP168_638 |
K insertion in K repeat region;K7K substitution |
| MHP168L_639 |
5'-nucleotidase precursor |
SNV |
MHP168_639 |
E411K substitution |
| MHP168L_666 |
Ribosomal RNA small subunit methyltransferase G |
Deletion |
MHP168_666 |
Frameshift out 12aa |
| MHP168L_668 |
Prolipoprotein p65 |
SNV |
MHP168_668 |
T138A substitution |
| MHP168L_671 |
XAA-PRO aminopeptidase |
SNV |
MHP168_671 |
G321G substitution |
| MHP168L_672 |
Putative uncharacterized protein |
SNV |
MHP168_672 |
E104E substitution |
| MHP168L_673 |
Putative uncharacterized protein |
SNV |
MHP168_673 |
I52K,E127K substitution |
| MHP168L_675 |
hypothetical protein |
SNV |
MHP168_675 |
Y175D substitution |
| MHP168L_676 |
P146 adhesin like-protein, p97 paralog |
Insertion+SNV |
MHP168_676 |
Q insertion in PQ repeat region;S404S,W404R substitution |
| MHP168L_688 |
Putative uncharacterized protein |
SNV |
MHP168_688 |
K48N substitution |
| MHP168L_698 |
hypothetical protein |
SNV |
MHP168_698 |
R126G,V159G substitution |
| MHP168L_707 |
hypothetical protein |
Insertion |
MHP168_707 |
"F" insertion |
| MHP168L_747 |
hypothetical protein |
Insertion+deletion+SNV |
MHP168_091 |
N repeat insertion;39-aa N-terminal extension;SNV |
| MHP168L_748 |
Protein P102 |
Deletion+SNV |
MHP168_108 |
Stop;782-aa truncation;SNV |
| MHP168L_749 |
Putative type III restriction-modification system: methylase |
Deletion |
MHP168_730 |
N-terminal deletion |
| MHP168L_750 |
hypothetical protein |
Deletion |
MHP168_435 |
Frameshift |
| MHP168L_r002 |
16S ribosomal RNA |
SNV |
MHP168_r002 |
Amino acid substitution |
| MHP168L_t027 | tRNA-Ser | SNV | MHP168_t027 | Amino acid substitution |