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. 2013 Feb 5;14:39. doi: 10.1186/1471-2105-14-39

Table 4.

Run time of PPLR and IPPLR

Datasets PPLR_1000 PPLR_10000 IPPLR
2 replicates
73.1
1330.8
27.5
5 replicates 125.4 3127.4 15.9

The run time (CPU seconds) for 2-replicate dataset is the average processing time over the 5 runs. The number after PPLR indicates the sample number used in the importance sampling of the algorithm. The program runs on the machine with Intel Pentium Dual-core 2.6GHz CPU and 8.0G RAM.