Table 2.
Top 15 up- and down-regulated protein coding genes following siRNA knockdown of T-UC.300A in SH-SY5Y cells
| Gene name | Mean fold change T-UC.300A siRNA knockdown | Mean fold change after ATRA |
|---|---|---|
| INPP5D |
3.72 |
|
| CALCA |
3.67 |
40.16 |
| LOC221442 |
3.24 |
|
| LOC644242 |
3.23 |
5.28 |
| TTC9B |
2.94 |
2.18 |
| GDF15 |
2.93 |
5.10 |
| USP9X |
2.78 |
|
| COL1A2 |
2.75 |
|
| C10orf85 |
2.70 |
|
| FLJ4184 |
2.62 |
|
| HBE1 |
2.53 |
|
| DPF3 |
2.44 |
|
| LOC402199 |
2.43 |
37.41 |
| FLJ44635 |
2.42 |
1.65 |
| KLF2 |
2.38 |
|
| RAB27B |
0.35 |
|
| FLJ44124 |
0.37 |
|
| CNTNAP5 |
0.07 |
|
| PAX5 |
0.38 |
|
| INHBA |
0.39 |
|
| PCDHGA10 |
0.39 |
|
| TOR1AIP2 |
0.39 |
0.23 |
| CHR4155SYT |
0.39 |
|
| ZNF718 |
0.40 |
|
| PRTG |
0.41 |
|
| HOOK1 |
0.41 |
0.38 |
| LOC643647 |
0.42 |
0.59 |
| LOC643523 |
0.42 |
|
| IPMK |
0.42 |
|
| ERCC4 | 0.43 |
Table shows fold change following knockdown across two biological repeats and also the corresponding mean fold change following ATRA if present.