Table 3.

Resequencing Results

Chr	Variant	Physical Positiona	Protein Domain	M	JMut (Minor Allele Count)	m	JPN_GWAS (MAF)				Rep_JPN (MAF)				Meta-Analysis
							Cases	Control	P allele	OR	Cases	Control	P allele	OR	P CMH	OR
1	p.Asp623Val	107.986.810	N-SH3	A	2	T	0.0006964	0.0008993	0.8561	0.7742	0.0003344	0	0.3171	NA	0.6649	1.662
1	p.Glu685Lys	107.947.271	SH2	G	1	A	0.0006974	0.001821	0.4151	0.3824	0.0003336	0	0.3168	NA	0.8415	0.8246
1	p.Glu705Lys	107.947.211	SH2	G	3	A	0.0007022	0.0009074	0.8557	0.7737	0.0006658	0.0003311	0.5605	2.011	0.7354	1.355
1	P.Glu741Gly	107.940.485	SH2	A	7	G	0.004972	0.01087	0.09038	0.4547	0.0074480	0.0117400	0.0897	0.6314	0.02065	0.5821

Note: M, major allele; m, minor allele; MAF, minor allele frequency; OR, odds ratio; P _CMH, Cochran-Mantel-Hentzel test.

^aNCBI 36 build.