Table 2. AP-specific small RNAs.

	Start	End	Str.	Size	Norm. Expression AP (RPKM)	Norm. Expression GP (RPKM)	Fold increase in AP	FliA promoter?
APsRNA1	499,375	499,581	+	207	50,451	3,181	16
APsRNA2	535,188	535,321	+	134	8,869	204	43
APsRNA3	561,854	561,981	+	128	14,726	77	191	yes
APsRNA4	562,984	563,081	+	98	3,500	30	116
APsRNA5	605,441	605,617	−	176	388,842	73	5295
merRNA	1,073,741	1,074,185	−	445	2,038,479	407	5006
APsRNA6	1,338,787	1,339,441	+	655	6,809	147	46	yes
APsRNA7	3,416,607	3,416,881	+	275	32,816	70	469	yes